Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0299
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 552 FYILFVIYFE*YLEAQLSIDIEGRSC 629
           +YI+ + +   YL   L ID+  R+C
Sbjct: 114 YYIIILAWALFYLLVSLRIDLPWRTC 139


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 552 FYILFVIYFE*YLEAQLSIDIEGRSC 629
           +YI+ + +   YL   L ID+  R+C
Sbjct: 167 YYIIILAWALFYLLVSLRIDLPWRTC 192



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = -2

Query: 724 ITSILVHLSHQPIPSVPSKYGNL*LSGIPPGKHDLPSMSIESC 596
           +   + H   +P+  V +    L     P    +LP  SI SC
Sbjct: 389 VVGFMAHEQQKPVADVAASGPGLAFLVYPSAVLELPGSSIWSC 431


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 122 IQNFLFNHSIYLKKPHQ 172
           +Q+F+  HS+YL++  Q
Sbjct: 88  LQSFMQQHSLYLQQQQQ 104


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 622 GHAYLVGCLRVRDYHIWMGRMGWV 693
           G AY V C   RD +I   ++ W+
Sbjct: 539 GDAYCVACGLHRDTYIHAQQIAWM 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,786
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)