Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0296
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    28   1.3  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   5.2  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    25   9.0  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   9.0  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 231 MGKNYSTILSINYSMSNPYK 290
           +G NY TILS+ +S+ N YK
Sbjct: 225 LGANYPTILSVMHSVVNAYK 244


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 48  CIFL--LLPLFRSSNFMVVCRHCFFNPLFVCSLLI 146
           C+F   L+PL  S N  +V  + +F  L   SLLI
Sbjct: 689 CVFYISLIPLHNSDNSEIVLGNNYFTTLIFSSLLI 723


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 231 MGKNYSTILSINYSMSNPYKY 293
           + K YS I SI++S  +PY +
Sbjct: 35  VAKEYSAITSIHFSAESPYDF 55


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 618 VSSPSPW*RVRAPIRSQSGA*RISCDMLYSLVRFWS 511
           V SP P  R R PIRS SG   ++     S  R +S
Sbjct: 535 VISPQPTRRSRTPIRSLSGRSSVASSRNSSRTRSYS 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,886
Number of Sequences: 5004
Number of extensions: 53649
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)