Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0296
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_45206| Best HMM Match : SAM_2 (HMM E-Value=2.8e-05)                 27   9.5  

>SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 87  FMVVCRHCFFNPLFVCSLLIQHLRSILIRKIPNDLYS-TVTKVH 215
           F+  CR     PL +C L+   L+   +R +P+ L+S  +TK H
Sbjct: 407 FLQNCRGNKKKPLKLCPLVKNRLKDFSLRNLPSVLWSLDITKKH 450


>SB_45206| Best HMM Match : SAM_2 (HMM E-Value=2.8e-05)
          Length = 169

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 572 ANQAHNAFRVTCYTL*YD 519
           +N AH+A + TCYT  YD
Sbjct: 26  SNPAHSALQYTCYTFVYD 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,033,971
Number of Sequences: 59808
Number of extensions: 371877
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)