Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0296
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81491-12|CAI46569.1|  177|Caenorhabditis elegans Hypothetical p...    27   8.4  
AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81491-12|CAI46569.1|  177|Caenorhabditis elegans Hypothetical
           protein D1086.10a protein.
          Length = 177

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 181 PTTCTVLSPKSMDVKYKWEKTIPPYLV 261
           PT+ T  +P + ++ ++W  T PP +V
Sbjct: 71  PTSTTTTAPGTTELPFEWNVTAPPSVV 97


>AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.4 protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = -2

Query: 529 SSTILVP*FSYPGPIYVNRFLRSKLQKKLTAAASRGLY*AKR*SYSMSYMFSKCYNCYFL 350
           +ST+LVP     G   VN+      ++ L +A +   Y        +S + + C   +  
Sbjct: 84  NSTLLVP-MGVLGQEEVNKIKEIAEEENLLSAVNN--YGGDHHKSDLSNVLNYCKRVFAS 140

Query: 349 CNNI*RQTIFIITNN 305
           C+N   Q++  +TNN
Sbjct: 141 CSNTRHQSVIYLTNN 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,786
Number of Sequences: 27780
Number of extensions: 292718
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)