Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0296
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    27   0.20 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   9.9  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -3

Query: 369 AIIATFFVTIFKDKPYL**LITKNNNICMDLTYYNLY*VWWNSFFPFIFNVH 214
           ++IA+    +F +K     +I  +NN+C  L   NL+ ++  ++FP +   +
Sbjct: 7   SVIASDMAVLFPEK-----IIGLHNNMCTSLNLSNLFWLFVGTYFPSLIGAN 53


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 397 YSMSYMFSKCYNCYFLCNNI*RQTIFI 317
           Y M       YNC  LCN + R   FI
Sbjct: 235 YYMHQQIMARYNCERLCNRLGRVKRFI 261


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 181 GIFRISMERKCCISNEQTNN 122
           G+F + + R  C+ + QTN+
Sbjct: 274 GVFEVLLVRLACMFDAQTNS 293


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = +3

Query: 528 ESIACHTKCVMRLIG 572
           E +AC+  C+++ +G
Sbjct: 57  EKLACYVDCMLKKVG 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,249
Number of Sequences: 438
Number of extensions: 3906
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)