Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0295
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   3.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.4  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   9.4  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   9.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.4  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 409 LISPQNYWLNIFYANHFNSYTL 474
           L  P+N  +NI YAN  NSY++
Sbjct: 379 LCGPKNPLINILYAN-MNSYSV 399


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/40 (22%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -1

Query: 286 QAPDKGYLHISTFS----PSFMSQIITCSHAPTAMYLPLI 179
           Q+P++ Y  ++  +    PS+ +Q ++C+H     Y+ ++
Sbjct: 344 QSPNQIYQPVTNLTNLTYPSYYNQDVSCTHYQNPEYISVV 383


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 216 VHMLQQRCIYH*YHSMLHVC 157
           VH+L   CIY+ Y+  L  C
Sbjct: 250 VHLLLLVCIYYFYYMHLLFC 269


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 424 NYWLNIFYANH 456
           +YW N FY N+
Sbjct: 9   DYWTNSFYQNY 19


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 424 NYWLNIFYANH 456
           +YW N FY N+
Sbjct: 9   DYWTNSFYQNY 19


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 424 NYWLNIFYANH 456
           +YW N FY N+
Sbjct: 9   DYWTNSFYQNY 19


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,383
Number of Sequences: 336
Number of extensions: 3938
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)