Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0295
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    43   5e-05
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   3.3  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.8  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.7  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   7.7  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   7.7  

>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 87  LTKQYLRYAPTGSFNIIASADCNSTHVTLNGIS--GRYIAVGACEHVIIWDMKLGEKVDI 260
           + K Y RY PT  F +IAS+ CN      +     GR I VG  E V+ WD+K G+ +  
Sbjct: 1   MVKSYTRYEPTEFFGVIASSGCNILGQPSSSAKSVGRAI-VGGLESVLEWDLKTGQLLSK 59

Query: 261 CKYPLSGACYLCI 299
            K     A   CI
Sbjct: 60  WKDSDCSAKVTCI 72


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 189 RYIAVGACEH-VIIWDMKLGEKVDICKYPLSGAC 287
           RY+   +C+  VI+WD   GEK+   K+  S +C
Sbjct: 268 RYLLSCSCDKSVILWDAFTGEKLRDYKHGFSVSC 301



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 108 YAPTGSFNIIASADCNSTHVTLNG 179
           + P G   I  S DC+ TH +LNG
Sbjct: 304 WLPDGLSFITGSPDCHITHWSLNG 327


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 432 VKYILCKSLQFIYPSVI-FCIVSFKTSIETMLN*RYAFHVFKNINR 566
           V+Y +   L  +  ++I FC  S  TS++++   R A  +F  IN+
Sbjct: 98  VEYRVSIGLMLLLSALIGFCSESIVTSVKSVYKLRKAHSIFSKINK 143


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 192 YIAVGACEHVIIWDMKLGEKVDICKYPLSGACY 290
           Y+A+G    +  + ++LG    + +Y L GACY
Sbjct: 86  YLAIGRNNDLPAFFVQLGTVRRLLEYNLEGACY 118


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 414 FTSKLLVKYILCKSLQFIYPSVIFCIVSF 500
           F S++L+     KSL   YP + + IV F
Sbjct: 325 FLSRVLIPLHKAKSLPLYYPQIAYGIVQF 353


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 259 YVNTLYP-GPVIYVFINVLYRFIHGY 333
           + N  YP GP I + +N ++ F+ GY
Sbjct: 423 FPNWTYPVGPYIIILLNGVFLFLQGY 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,114
Number of Sequences: 5004
Number of extensions: 60278
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)