Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0295
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    29   2.6  
02_02_0499 + 10989645-10989929,10990303-10990395,10990952-109910...    29   3.4  
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649...    28   7.9  

>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 514 SIEVLNETMQNITEGYMN*SDLHKIYLTSNFEVKLNNIYTGVSFN 380
           +I+VL + ++ I E Y+N SD+  +   S+  V  +N+ TG S N
Sbjct: 646 TIQVLRQYVKKIDEKYLNSSDMEAVTGKSSL-VSGDNVKTGCSIN 689


>02_02_0499 +
           10989645-10989929,10990303-10990395,10990952-10991066,
           10991187-10991297,10991701-10991783,10991872-10991929,
           10992490-10992569
          Length = 274

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = +3

Query: 81  MGLTKQYLRYAPTGSFNIIASADCNSTHVTLNGISGRYIAVGACEHVIIWDMKLGEKVDI 260
           +G  K  L Y+   S N+      +S  V L         VGA  H  I +    + + I
Sbjct: 196 VGAKKIGLSYSAEKSVNLFDYVAKSSDDVPL------VFVVGAMAHGKIDNEYSDDYIQI 249

Query: 261 CKYPLSGACYL 293
           C YPLS AC L
Sbjct: 250 CNYPLSAACCL 260


>04_04_0750 +
           27763841-27763972,27764311-27764485,27764908-27764998,
           27764999-27765133,27765683-27765742,27765876-27765951,
           27766037-27766174,27766509-27767373,27767763-27767865,
           27768101-27768176,27768329-27768393,27768463-27768493,
           27768618-27768725
          Length = 684

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 211 HAPTAMYLPLIPFNVTCVLLQSALAIILKEPVGAYRRYCLV 89
           H  T M   L+P  + CV+++ A AI  ++ +G  R YC V
Sbjct: 11  HFGTHMVDDLLPV-LCCVVIRGATAIGYRDIIGRLRDYCRV 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,858
Number of Sequences: 37544
Number of extensions: 312519
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)