Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0295
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)                   51   8e-07
SB_43548| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28)                 30   2.0  
SB_41633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)                    28   8.1  

>SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)
          Length = 291

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 26/62 (41%), Positives = 32/62 (51%)
 Frame = +3

Query: 81  MGLTKQYLRYAPTGSFNIIASADCNSTHVTLNGISGRYIAVGACEHVIIWDMKLGEKVDI 260
           M LTK YLRYA   SF ++ S   N   V+  G  G      A E V+IWD +  EKV +
Sbjct: 1   MVLTKSYLRYASLASFGVVGSLKSNVLFVSREGARGVLAVAAALEDVVIWDTRRQEKVLV 60

Query: 261 CK 266
            K
Sbjct: 61  LK 62


>SB_43548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 242 KFHVPNNNMFTCSNSDVSTTNTIQCYMCAITVCTCNNIKRAGRGVPQILF 93
           +FHVP N   +  +  + T      Y   ++VC CN+I RA      I F
Sbjct: 625 EFHVPENTFVSEGDRTLVTVVVNGKYDIPLSVCGCNSIHRAAHHSDHIRF 674


>SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28)
          Length = 675

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -3

Query: 290 ITGPG*RVFTYIYL--FTKFHVPNNNMFTCSNSDVSTTNTIQCYMCAITVC 144
           I GPG  V +Y YL  F K     NN+ T S  +   T T+   +    VC
Sbjct: 193 IIGPG-SVMSYCYLRVFLKVKQHENNIHTISAEETKITRTLAAIVVVFLVC 242


>SB_41633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 387 LTPV*MLFNFTSKLLVKYILCKSLQFIYPSVIFCIVSFKTSIETMLN*RYAFHVFKNINR 566
           L  + +L   T+KLL KY +  +LQ I   + +   ++  +  ++LN    FHV   +  
Sbjct: 18  LNAIQLLAIVTTKLLKKYGIDPTLQVIIRDLSYLEQTYGLNQRSLLNDSRYFHVIDGLPA 77

Query: 567 DPMEPNLK 590
           D M   L+
Sbjct: 78  DAMHDVLE 85


>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
          Length = 609

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +3

Query: 123 SFNIIASADCNSTHVTLNGISGRYIAVGACEHVI 224
           SF  IA A C  THV  N IS   IA    EH+I
Sbjct: 163 SFETIAWATCGPTHVN-NPISLTCIASKVLEHII 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,837,324
Number of Sequences: 59808
Number of extensions: 411421
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)