Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0295
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL121993-4|CAI22739.1|  943|Homo sapiens WD repeat domain 3 prot...    77   6e-14
AF083217-1|AAD45865.1|  943|Homo sapiens WD repeat protein WDR3 ...    77   6e-14
BC058836-1|AAH58836.1|   40|Homo sapiens WDR3 protein protein.         31   2.9  
BC032685-1|AAH32685.1|  662|Homo sapiens EML5 protein protein.         31   5.0  

>AL121993-4|CAI22739.1|  943|Homo sapiens WD repeat domain 3
           protein.
          Length = 943

 Score = 77.0 bits (181), Expect = 6e-14
 Identities = 34/58 (58%), Positives = 40/58 (68%)
 Frame = +3

Query: 81  MGLTKQYLRYAPTGSFNIIASADCNSTHVTLNGISGRYIAVGACEHVIIWDMKLGEKV 254
           MGLTKQYLRY  +  F +I S   N   VTL G  GRY+AV ACEHV IWD++ GEK+
Sbjct: 1   MGLTKQYLRYVASAVFGVIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKI 58


>AF083217-1|AAD45865.1|  943|Homo sapiens WD repeat protein WDR3
           protein.
          Length = 943

 Score = 77.0 bits (181), Expect = 6e-14
 Identities = 34/58 (58%), Positives = 40/58 (68%)
 Frame = +3

Query: 81  MGLTKQYLRYAPTGSFNIIASADCNSTHVTLNGISGRYIAVGACEHVIIWDMKLGEKV 254
           MGLTKQYLRY  +  F +I S   N   VTL G  GRY+AV ACEHV IWD++ GEK+
Sbjct: 1   MGLTKQYLRYVASAVFGVIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKI 58


>BC058836-1|AAH58836.1|   40|Homo sapiens WDR3 protein protein.
          Length = 40

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 81  MGLTKQYLRYAPTGSFNIIAS 143
           MGLTKQYLRY  +  F +I S
Sbjct: 1   MGLTKQYLRYVASAVFGVIGS 21


>BC032685-1|AAH32685.1|  662|Homo sapiens EML5 protein protein.
          Length = 662

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 102 LRYAPTGSFNIIASADCNSTHVTLNGISGRYIAVGAC 212
           L+Y+P G++  +    CN + V + G++ RY  VG C
Sbjct: 414 LKYSPDGTYLAVG---CNDSSVDIYGVAQRYKKVGEC 447


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,180,229
Number of Sequences: 237096
Number of extensions: 1931772
Number of successful extensions: 8293
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8293
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)