Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0295
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21540.1 68416.m02717 transducin family protein / WD-40 repea...    35   0.058
At1g67140.1 68414.m07638 expressed protein                             30   1.2  
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi...    27   8.8  
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea...    27   8.8  

>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (10 copies); similar to WD-repeat protein
           3 (SP:Q9UNX4) [Homo sapiens]
          Length = 955

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 87  LTKQYLRYAPTGSFNIIASADCNSTHVTLNGISGRYIAVGACEHVIIWDMKLG 245
           + K Y RY    SF +I+S D N  + +    +G+Y+   A E V IW ++ G
Sbjct: 1   MVKAYQRYDAATSFGVISSVDSNIAYDS----TGKYVLAPALEKVGIWHVRQG 49


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 196  SLLEHVNMLLFGT*NLVKR*IYVNTLYPGPVIYVFINV 309
            +LLE+VN  LF T  L+    Y+N LYP   +   +N+
Sbjct: 902  TLLEYVNAFLFATIILIHCYYYMNYLYPVSSLIFIVNL 939


>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
            PF00010 helix-loop-helix DNA-binding domain; PMID:
            12679534; putative bHLH131 transcription factor
          Length = 1513

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 269  VFTYIYLFTKFHVPNNNMFTCS 204
            VF YIY+  KF++P+N + + S
Sbjct: 1232 VFIYIYIHNKFNIPSNVLLSPS 1253


>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); U3
           snoRNP-associated 55-kDa protein, Homo sapiens,
           gb:NP_004695;  Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) [Podospora anserina]
          Length = 504

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 186 GRYIAVGACE-HVIIWDMKLGEKV 254
           GRY+A G  + HV IWD++  E V
Sbjct: 234 GRYLATGGVDRHVHIWDVRTREHV 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,647
Number of Sequences: 28952
Number of extensions: 281329
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)