Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0294
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    91   2e-19
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.48 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.9  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.8  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 53/134 (39%), Positives = 74/134 (55%)
 Frame = -3

Query: 660 VSDTYKMKLVDEVIYEVTGRLVTRAQGDIPDRGF*SFXXXXXXXXXXXXXXGVDIVLNHR 481
           VSD Y +K VD+++YE   ++VT  QG   D G                    ++V + R
Sbjct: 14  VSDAYDLKEVDDIVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEEGTETVNNLVYSFR 73

Query: 480 LVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFF 301
           L  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  FK+  F+
Sbjct: 74  LSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFY 131

Query: 300 TGESMDCDGMVAMM 259
            GESMD D MV +M
Sbjct: 132 IGESMDPDAMVVLM 145


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 504 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 358
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 144 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVP 242
           AS ELL+       NFS+ R CL+N ++  CVP
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVP 812


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 304 ELKFLKPAEDVFHYFVHVCFKYFNLVR 384
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,219
Number of Sequences: 5004
Number of extensions: 54376
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)