Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0294
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 296 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 394
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 296 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 394
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 141 GASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLIPSWQPCHHN 284
           GA       F+ N+   S+S    K I   +     S IP+W P +H+
Sbjct: 301 GADFPFNFAFIKNVSRDSNSSDFKKLIDNWMTYMPPSGIPNWVPGNHD 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,774
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)