Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0294
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05540.1 68416.m00607 translationally controlled tumor family... 55 4e-08
At3g16640.1 68416.m02127 translationally controlled tumor family... 53 2e-07
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 31 0.54
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR... 31 0.72
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 28 6.7
At1g80960.3 68414.m09501 F-box protein-related contains weak hit... 28 6.7
At1g80960.2 68414.m09500 F-box protein-related contains weak hit... 28 6.7
At1g80960.1 68414.m09499 F-box protein-related contains weak hit... 28 6.7
At5g06090.1 68418.m00676 phospholipid/glycerol acyltransferase f... 27 8.9
At2g46060.2 68415.m05730 transmembrane protein-related contains ... 27 8.9
At2g46060.1 68415.m05729 transmembrane protein-related contains ... 27 8.9
At1g08710.1 68414.m00967 F-box family protein similar to ESTs gb... 27 8.9
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/74 (37%), Positives = 46/74 (62%)
Frame = -3
Query: 504 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILG 325
VDI+ RL E +F DKK + +++K Y+K+L KL+ + E+FK ++ K ++
Sbjct: 55 VDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESATKFLMS 110
Query: 324 RFKELQFFTGESMD 283
+ K+ QFF GESM+
Sbjct: 111 KLKDFQFFVGESME 124
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 53.2 bits (122), Expect = 2e-07
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Frame = -3
Query: 660 VSDTYKMKLVDE-VIYEVTGRLVTRAQGDIPDRGF*SFXXXXXXXXXXXXXXGV-DIVLN 487
+SD++ K ++ +++EV G+ VT D+ S V DIV
Sbjct: 14 LSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDIVDT 73
Query: 486 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 307
RL E + DKK + Y+K Y+K L KL E+ DQ VFK + K +L R + Q
Sbjct: 74 FRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQ 129
Query: 306 FFTGESMDCD 277
FF GE M D
Sbjct: 130 FFVGEGMHDD 139
>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 953
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 447 ISCHRRRMFRLACGSGLCQLRLDGRVRALVSLFSRRIKTLDLGYHPVLSSP 599
I+C R+ ++ G+ L L+G++ A +S S ++ LDL Y+P LS P
Sbjct: 60 ITCQNDRVVSISLGN----LDLEGKLPADISFLSE-LRILDLSYNPKLSGP 105
>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1355
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 426 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 283
D M+ + KL P +EVFK+N N + ++ F ++ FF GE D
Sbjct: 226 DKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274
>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P41972 Isoleucyl-tRNA
synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
(IleRS) {Staphylococcus aureus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 1093
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Frame = -3
Query: 354 MNKVMKDILGRFKELQFFTGE---SMDCDGM-VAMMELETL 244
+NK++KDI+ R+K LQ + + DC G+ + + L++L
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGLPIELKVLQSL 207
>At1g80960.3 68414.m09501 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 462
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 147 SLELLSYFLSNI*NFS---SSRPCLKNIMIGICVPSKSLIP 260
+L+LLS I F+ +S PCL+ +++GIC KS +P
Sbjct: 213 TLKLLSIVAPEIGVFNRVLASCPCLEVLVLGICCFKKSRVP 253
>At1g80960.2 68414.m09500 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 147 SLELLSYFLSNI*NFS---SSRPCLKNIMIGICVPSKSLIP 260
+L+LLS I F+ +S PCL+ +++GIC KS +P
Sbjct: 213 TLKLLSIVAPEIGVFNRVLASCPCLEVLVLGICCFKKSRVP 253
>At1g80960.1 68414.m09499 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 147 SLELLSYFLSNI*NFS---SSRPCLKNIMIGICVPSKSLIP 260
+L+LLS I F+ +S PCL+ +++GIC KS +P
Sbjct: 213 TLKLLSIVAPEIGVFNRVLASCPCLEVLVLGICCFKKSRVP 253
>At5g06090.1 68418.m00676 phospholipid/glycerol acyltransferase
family protein contains Pfam profile PF01553:
Acyltransferase
Length = 500
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 474 RLACGSGLCQ-LRLDGRV-RALVSLFSRRIKTLDLGYHPVLSSPTYRSL-RK*LHRPI 638
R +GL Q +D V ++ +LF R L LG H + SPT+ SL + +H P+
Sbjct: 144 RFGYATGLIQETNVDQSVFNSVANLFVDRRPQLGLGRHIISDSPTFLSLCEEQVHAPV 201
>At2g46060.2 68415.m05730 transmembrane protein-related contains
weak similarity to Swiss-Prot:Q9HCN3 transmembrane
protein 8 precursor (M83 protein) [Homo sapiens]
Length = 766
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 366 ILQLGQAPSLPILLLIFSYSL*GTMCRISCHRRRMFRLACGSGLCQLRLDGRVRALVSLF 545
+L L QA ++++ + G + +R CGS L + R RA+ F
Sbjct: 660 LLALTQATRASNIIIVLAIGSLGLLIGFLVEFVTKYRSYCGSAGFSLNMLDRPRAVKEWF 719
Query: 546 SRRIKTL 566
S IKTL
Sbjct: 720 SNLIKTL 726
>At2g46060.1 68415.m05729 transmembrane protein-related contains
weak similarity to Swiss-Prot:Q9HCN3 transmembrane
protein 8 precursor (M83 protein) [Homo sapiens]
Length = 807
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 366 ILQLGQAPSLPILLLIFSYSL*GTMCRISCHRRRMFRLACGSGLCQLRLDGRVRALVSLF 545
+L L QA ++++ + G + +R CGS L + R RA+ F
Sbjct: 660 LLALTQATRASNIIIVLAIGSLGLLIGFLVEFVTKYRSYCGSAGFSLNMLDRPRAVKEWF 719
Query: 546 SRRIKTL 566
S IKTL
Sbjct: 720 SNLIKTL 726
>At1g08710.1 68414.m00967 F-box family protein similar to ESTs
gb|T22270 and gb|T76886 ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 274
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 414 FSYSL*GTMCRISCHRRRMFRLACGSGLCQLRL 512
FSY +C IS RR+FRL+C L L L
Sbjct: 24 FSYK---DLCCISISSRRLFRLSCDDSLWDLLL 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,114,809
Number of Sequences: 28952
Number of extensions: 273794
Number of successful extensions: 689
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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