Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0293
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    29   0.84 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.1  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    27   1.9  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   4.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   4.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.9  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 278 INLQKYIRCLVHVFFKLFYIEALMELVYIFLILNLHSDM---YFLKKANLLQ 424
           I+ QKY  C++   + LF  +  +    I  + N H D+   + LKK  +L+
Sbjct: 242 ISPQKYFSCILPQVWSLFSTQPRLASQLIIAVTNTHCDIVTSFLLKKLQILE 293


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 521  SPKPKGTKFNTNL-LITIFTKEFSNEH 444
            SP P  T F+TN  +IT+F KE +NEH
Sbjct: 1738 SPPPIHTNFDTNADIITLFEKE-ANEH 1763


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 365 FLILNLHSDMYFLKKANLLQNSSLY 439
           FLI  LHSD+YFL   +++   ++Y
Sbjct: 201 FLIETLHSDIYFLHSPSIIALGAIY 225


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 312 WTRQRIYFCKLMKMKTNHLIMMHSLNHF 229
           WT + ++F  L  ++ N L++ H L HF
Sbjct: 325 WTTRYVFFLFLFIIERNKLLLTHFLAHF 352


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 561 SYVFYKSLKPNIYYMRSESTIVVLATHVCI 650
           +YV  K  + + +YMRSE  I VL  ++ I
Sbjct: 906 AYVIIKGAQGDQFYMRSEDPIYVLENNIPI 935


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -3

Query: 270 KTNHLIMMHSLNHFSFV*CKIISMSV----NYKFQIIDHCNQCANAH*LKC 130
           K + +++  S+   + + C + SMSV    N+ + I DHC Q  +    KC
Sbjct: 100 KPHFVLVRSSIPSVASLTCSVNSMSVSPQSNFMYAICDHCEQPIHNVRYKC 150


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 415 LITKFFSLYLCSLLNSLVKIVISKFVLNLVPFGFGLISNVFCFFLLFYLVMCFI 576
           +I  +FS+ +     S ++ + +K +LNLV     L        LLF +++C +
Sbjct: 430 VILLYFSILMDDFYTSAIQAMATKLILNLVERIVALEDFSTSRSLLFAILLCLL 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,791
Number of Sequences: 5004
Number of extensions: 48389
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)