Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0293
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    37   0.012
Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical pr...    34   0.11 
U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine rece...    32   0.34 
Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U50311-2|AAA92308.2|  486|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U80031-6|AAB37618.2|  491|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U58761-1|AAB00712.1|  333|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF045646-8|AAK29830.1|  541|Caenorhabditis elegans Udp-glucurono...    28   7.3  

>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -3

Query: 303 QRIYFCKLMKMKTNHLIMMHSLN-HFSFV*CKIISMSVNYKFQIIDHCNQCANAH*LKCQ 127
           Q+IYFCK  K ++ H ++++ L  HF  + C + +   N + +  D   +   A  ++C+
Sbjct: 183 QKIYFCKTTKSESVHQVVLNKLTLHFEIIKCSVCTYDKNLELEYYDKKTK-LYAETVRCE 241

Query: 126 ST 121
           +T
Sbjct: 242 TT 243


>Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical
           protein C03E10.1 protein.
          Length = 274

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +1

Query: 382 TFRHVFLKKG*LITKFFSLYLCSLL-NSLVKIVISKFVLNLVPFGFGLISNVFCFFLLFY 558
           T R++  +   L    F+  LC+LL N+L+ +    FVLN++PFG      ++ FFL++ 
Sbjct: 181 TKRYMLSESFELCQSSFNAILCALLINTLLFVSFWLFVLNIIPFGV-----IYQFFLIYG 235

Query: 559 LVM 567
           +++
Sbjct: 236 VIL 238


>U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 1 protein.
          Length = 355

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 424 KFFSLYLCSLLNSLVKIVISKFVLNLVPFGFGLISNVF--CFFLLFYLVMCFIN 579
           K+ SL+LCS       +     + +L+PF       VF  C   LFYLV+ ++N
Sbjct: 142 KWISLFLCSEFTVACGVSAIVMLYDLLPFAVMAFLGVFISCASFLFYLVLFYMN 195


>Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical
           protein F44F1.3 protein.
          Length = 646

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 554 NSKKKQKTLEISPKPKGTKFNTNLLITIFTKEFSNEHKYKEK 429
           NS ++++ LE+  K    K+ TN+  TIF  +  NE +  EK
Sbjct: 2   NSPQEEELLELIEKYNEDKYCTNMNWTIFLGDHENEKEANEK 43


>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -1

Query: 509 KGTKFNTNLLITIFTKEFSNEHK---YKEKNFVIS*PFLRNTCRNVNLKL 369
           KG + N N+++    ++ S +HK   +KEK FV+    L +  RN ++K+
Sbjct: 9   KGEENNNNVILKEHHEQVSVKHKKREFKEKTFVVRESLLTSEFRNGHMKI 58


>U50311-2|AAA92308.2|  486|Caenorhabditis elegans Hypothetical
           protein C25E10.4 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 379 FTFRHVFLKKG*LITKFFSLYLCSLLNSLVKIVISK-FVLNLVPFGFGLISNVFCFFLLF 555
           ++F+   +K   ++++F +++ C++  S+  +   K + L  V    G +SN  C  L  
Sbjct: 93  WSFKARSVKYPMIVSRFIAIFACTIYLSVEYVPTGKRYALMCVYILIG-VSNSACTILRG 151

Query: 556 YLVMC 570
           YLVMC
Sbjct: 152 YLVMC 156


>U80031-6|AAB37618.2|  491|Caenorhabditis elegans Hypothetical
           protein B0554.7 protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 415 LITKFFSLYLCSLLNSLVKIVISKFVLNLVPFGFGLISNVFCFF 546
           L T  F+  L ++    + +VIS F     PFGF  I++ + +F
Sbjct: 66  LTTSLFTPSLLNIWTPKILLVISSFCFAAFPFGFLFINSYYHYF 109


>U58761-1|AAB00712.1|  333|Caenorhabditis elegans Hypothetical
           protein C01F1.4 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 299 RCLVHVFFKLFYIEALMELVYIFLIL 376
           +C+   F++ FY  AL+ L+ +FLI+
Sbjct: 161 KCMGIKFYENFYFRALVSLIIVFLII 186


>AF045646-8|AAK29830.1|  541|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein52 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 263 FVFIFINLQKYIRCLVHVFFKLFYIEALMELVYIFLILNLHSDMYFLKKANLLQN 427
           F   F  +   IRCLV +F     I+ L  L YI L+   H D       +L++N
Sbjct: 5   FQIFFTPMTSPIRCLVFLFTLPRVIQTLHVLFYILLLGKSHIDFTDSLIESLVEN 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,059
Number of Sequences: 27780
Number of extensions: 264248
Number of successful extensions: 737
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)