Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0293
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   2.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.4  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 578 FIKHITK*NSKKKQKTLEISPKPKGTKFN 492
           +I+H+TK N+  ++K  E++ + KG  F+
Sbjct: 95  YIEHLTKLNNAIEEKRFELTNR-KGVVFH 122


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 3   ARGRV*GPKVSAHRCSLTSAAGDYSN 80
           A GRV  P + A+ C +  A GD ++
Sbjct: 61  ADGRVSCPVLRAYTCPICGACGDIAH 86


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 313 MDQTTNILL*INEDENESP 257
           M++ TN     NEDE+E+P
Sbjct: 424 MEEPTNTASGSNEDEDETP 442


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 556 YLVMCFINL*NLIYIICEVNLRLW 627
           YLVMCF+ +   +     VN   W
Sbjct: 307 YLVMCFVFVFAALLEYAAVNYTYW 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,411
Number of Sequences: 438
Number of extensions: 3438
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)