Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0293
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27654.1 68417.m03976 expressed protein                             28   6.8  
At2g32040.1 68415.m03914 integral membrane transporter family pr...    28   6.8  

>At4g27654.1 68417.m03976 expressed protein
          Length = 67

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 266 VFIFINLQKYIRCLVHVFFKLFYIEALMELVYI--FLILNLHSD 391
           +F+ I+    IR L  VFF LF+   L+E  ++  F  +NL SD
Sbjct: 23  IFLLISSISDIRRLWIVFFFLFFTTFLIEFCFLHTFFKINLKSD 66


>At2g32040.1 68415.m03914 integral membrane transporter family
           protein contains 9 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 560

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +1

Query: 346 DGVGLYFFNFKFTFRHVFLKKG*LITKFFSLYLCSLLNSLVKIV-ISKFVLNLVPFGFGL 522
           D    YF   K  F   FL +  L+T   SL    L N  +K V + K  L    FG GL
Sbjct: 367 DSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKIFLVTTIFGTGL 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,243,397
Number of Sequences: 28952
Number of extensions: 219903
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)