Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0292
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.3  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 572 NNY*FK*NLIKFNTTQYNCNIY 507
           NNY +  N  K+N   YN  +Y
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKLY 341


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 581 IN*NNY*FK*NLIKFNTTQYNCNIY 507
           I+ NNY +  N   +N   YN  +Y
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 581 IN*NNY*FK*NLIKFNTTQYNCNIY 507
           I+ NNY +  N   +N   YN  +Y
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLY 113


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -3

Query: 578 N*NNY*FK*NLIKFNTTQYNCNIYPFVLK-YYKY*KIE 468
           N NNY +  N   +N   YN N      K YY    IE
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIE 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,191
Number of Sequences: 438
Number of extensions: 1946
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)