Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0291
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000065F40F Cluster: Homolog of Gallus gallus "Restin...    35   2.2  
UniRef50_Q7RRC2 Cluster: Cell division protein; n=4; Plasmodium ...    33   6.6  

>UniRef50_UPI000065F40F Cluster: Homolog of Gallus gallus "Restin
           (Cytoplasmic linker protein-170) (CLIP-170).; n=1;
           Takifugu rubripes|Rep: Homolog of Gallus gallus "Restin
           (Cytoplasmic linker protein-170) (CLIP-170). - Takifugu
           rubripes
          Length = 534

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 7   EVKHATRICEVEPSDKIEIEQLSAATGRILNDYLYLSRVYASLFTEHSVVCCSLDE 174
           E KH   I   +  ++  +E+L     ++ NDY Y+ + Y   F+EH V C  LD+
Sbjct: 301 EGKHLNEILTRKELNRA-VEELKHQLKQVENDYKYVEQKYEHEFSEHRVTCEELDK 355


>UniRef50_Q7RRC2 Cluster: Cell division protein; n=4; Plasmodium
           (Vinckeia)|Rep: Cell division protein - Plasmodium
           yoelii yoelii
          Length = 1110

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
 Frame = -3

Query: 286 SHNTTNELNIMLNYKDYGDYFY*LN*GDTMAAWC-------NFSVRQDCSRPPNVP*TNS 128
           ++N +NE+N M  YKDY  +F+ +N  +    W        N+ + ++  +  N+   N 
Sbjct: 378 ANNNSNEINNMSIYKDYKHFFHNINKNNIKTIWIDPSNNTFNYFLNKNSGKNGNIIIFNQ 437

Query: 127 HKLEIN--INNRSV 92
            KL  N  INN  +
Sbjct: 438 PKLSNNNDINNNDI 451


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,531,883
Number of Sequences: 1657284
Number of extensions: 11294676
Number of successful extensions: 23190
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23186
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)