Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0291
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    27   0.11 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    27   0.11 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    27   0.11 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.77 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.2  

>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 76

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 31  CEVEPSDKIEIEQLSAATGRILNDYLYLSRV 123
           C + PS+  E +QLS   G +  +YL L ++
Sbjct: 3   CPLRPSEAQEGDQLSEECGMLYGEYLMLDKI 33


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 31  CEVEPSDKIEIEQLSAATGRILNDYLYLSRV 123
           C + PS+  E +QLS   G +  +YL L ++
Sbjct: 3   CPLRPSEAQEGDQLSEECGMLYGEYLMLDKI 33


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 31  CEVEPSDKIEIEQLSAATGRILNDYLYLSRV 123
           C + PS+  E +QLS   G +  +YL L ++
Sbjct: 3   CPLRPSEAQEGDQLSEECGMLYGEYLMLDKI 33


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 349 NLGTAIRPHGLGFKITTVVLIIIFI 423
           +LG  + P  L FK+ T+V I I I
Sbjct: 13  SLGNTVTPVSLRFKLYTIVHIFIII 37


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 208 GDTMAAWCNFSVRQDCSR 155
           G + + WCN+S     SR
Sbjct: 141 GFSSSTWCNYSAYSSASR 158


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 154 PPNVP*TNSHKLEININ 104
           PPN P    H  EIN N
Sbjct: 697 PPNFPTCGDHVPEINSN 713


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,551
Number of Sequences: 336
Number of extensions: 3230
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)