Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0291
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    30   0.36 
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   5.9  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   5.9  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   7.8  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 648  INHIKTHYLYYKYINNTFNRMVDYLLVAI----LYSLGFMQKLHNY 523
            +++I   YLY KY N T   + DY    +    L  +GF+  LH Y
Sbjct: 1130 LDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKY 1175


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -1

Query: 534 LHNY*IM*ALRY*YFIKGACLTE*M*IY--N*TFQRLGSNKYYNKHNCGDFKTEAMWS 367
           +H+Y I        + KG+C+   +  Y    TF + G  KY +KH  G+  TE +W+
Sbjct: 388 MHDYEINQIFDAISYSKGSCVIRMVSKYVGEDTFIK-GIQKYISKHRYGNTVTEDLWA 444


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -2

Query: 173 SSRLQQTTECSVNKLA*TRDKYK*SFSILPVAAESCSISILSLG 42
           S+ L ++   +V++ +  ++KY   FS     ++SCS+++   G
Sbjct: 115 STSLTRSASATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVSGTG 158


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 326 ICIII*GRTWVRRLDHMASVLKSPQLCLL*YLFDPSL 436
           +C+ +   T  RR  H++S L+S  LC L  L  P L
Sbjct: 731 LCLALTKHTGFRRSSHISSDLRSIALCYLSTLPTPLL 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,219
Number of Sequences: 5004
Number of extensions: 49830
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)