Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0291
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12045| Best HMM Match : bZIP_1 (HMM E-Value=4.2)                    29   2.7  
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   29   4.7  
SB_8439| Best HMM Match : rve (HMM E-Value=1.5e-18)                    28   6.2  
SB_4246| Best HMM Match : rve (HMM E-Value=1.4e-13)                    28   6.2  
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_3883| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_16837| Best HMM Match : rve (HMM E-Value=2.1e-20)                   28   8.2  

>SB_12045| Best HMM Match : bZIP_1 (HMM E-Value=4.2)
          Length = 220

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 325 KPEMRGKILNYRDSHNTTNELNIMLNYKDYGDYFY*LN*GDTMAAWC--NFSVRQDCSRP 152
           KPE + ++ +     N T +  ++L+Y+DY +     N GD   + C  NF   +D  +P
Sbjct: 69  KPERQKRVASSNFQENRTKKSKVILDYEDYIE-----NEGDVPFSGCHLNFPNNKDLVQP 123

Query: 151 PN 146
            N
Sbjct: 124 EN 125


>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 89  EY*TIIYIYLEFMRVCLRNIRWSAAVLTNAKVTPCGHGVP 208
           +Y  ++  Y +F+ VCL   + +A V ++ K     HG+P
Sbjct: 809 DYLVVVDYYSKFIEVCLLRDKTAATVKSHMKSVFARHGIP 848


>SB_8439| Best HMM Match : rve (HMM E-Value=1.5e-18)
          Length = 317

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 89  EY*TIIYIYLEFMRVCLRNIRWSAAVLTNAKVTPCGHGVP 208
           +Y  ++  Y +F+ VCL   + +A V ++ K     HG+P
Sbjct: 51  DYLVVVDYYSKFIEVCLLRDKTAATVKSHMKSIFARHGIP 90


>SB_4246| Best HMM Match : rve (HMM E-Value=1.4e-13)
          Length = 189

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 89  EY*TIIYIYLEFMRVCLRNIRWSAAVLTNAKVTPCGHGVP 208
           +Y  ++  Y +F+ VCL   + +A V ++ K     HG+P
Sbjct: 36  DYLVVVDYYSKFIEVCLLRDKTAATVKSHMKSIFARHGIP 75


>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 89  EY*TIIYIYLEFMRVCLRNIRWSAAVLTNAKVTPCGHGVP 208
           +Y  ++  Y +F+ VCL   + +A V ++ K     HG+P
Sbjct: 828 DYLVVVDYYSKFIEVCLLRDKTAATVKSHMKSIFARHGIP 867


>SB_3883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 73  SAATGRILNDYLYLSRVYASLFTEHSVVCCSLDE 174
           SA++ R L + + LS +  S+F  HSV C    E
Sbjct: 99  SASSARWLKELMQLSGIDTSIFKAHSVRCAGATE 132


>SB_16837| Best HMM Match : rve (HMM E-Value=2.1e-20)
          Length = 453

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 89  EY*TIIYIYLEFMRVCLRNIRWSAAVLTNAKVTPCGHGVP 208
           +Y  ++  Y +F+ VCL   + +A V ++ K     HG+P
Sbjct: 181 DYLVVVDYYSKFIEVCLLRDKAAATVKSHMKSIFARHGIP 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,386,759
Number of Sequences: 59808
Number of extensions: 360009
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)