Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0291
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L prot...    29   3.1  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    29   4.1  
Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 67  QLSAATGRILNDYLYLSRVYASLFTEHSVVCCSLDER*SYTMRPW 201
           Q+    G  + D L++SR       E   VC SLD +   TM  W
Sbjct: 209 QIGTCEGIDMGDQLWMSRYILHRVAEQFGVCVSLDPKPKVTMGDW 253


>Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical
           protein C52E4.6a protein.
          Length = 480

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 55  IEIEQLSAATGRILNDYLYLSRVYASLFTEHSVVCCSL 168
           +++ Q +AATG+IL    Y  + +     EH+V  C L
Sbjct: 120 LKLPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLL 157


>AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L
           protein.
          Length = 480

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 55  IEIEQLSAATGRILNDYLYLSRVYASLFTEHSVVCCSL 168
           +++ Q +AATG+IL    Y  + +     EH+V  C L
Sbjct: 120 LKLPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLL 157


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 402 CAYYNIYSTLAFEMFNCRSTFIQSGRHL**NINIVVLT-LFNNYVIFA*TLMNIE*QLTN 578
           C YY  YST  F     R   I   R++   I+I VL+ L  N+V+   TL     Q   
Sbjct: 234 CLYYLFYSTKQFTSKKTRQMQITFFRNIVLQISIPVLSFLPTNFVVTTSTLAEYNNQALI 293

Query: 579 NLPF 590
           NL F
Sbjct: 294 NLFF 297


>Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical
           protein F26D10.10 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 67  QLSAATGRILNDYLYLSRVYASLFTEHSVVCCSLDER*SYTMRPW 201
           Q+    G  + D L+++R       E   VC SLD +   TM  W
Sbjct: 209 QIGTCEGIDMGDQLWMARYILHRVAEQFGVCVSLDPKPKVTMGDW 253


>Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical
           protein C28D4.3 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 67  QLSAATGRILNDYLYLSRVYASLFTEHSVVCCSLDER*SYTMRPW 201
           Q+    G  + D L+++R       E   VC SLD +   TM  W
Sbjct: 209 QIGTCLGIEMGDQLWMARYILHRVAEQFGVCVSLDPKPRVTMGDW 253


>U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical
           protein B0222.3 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -2

Query: 173 SSRLQQTTECSVN---KLA*TRDKYK*SFS-ILPVAAESCSISILSLGSTSQIRVACF 12
           S+ L++ TE SV    K   T  K +  F+ +LP    S S SI  L ST Q+  ACF
Sbjct: 285 SAELEEFTEGSVTNQQKTMSTPGKIRKFFTWLLPDRTRSDSRSITQLFSTIQVFTACF 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,233
Number of Sequences: 27780
Number of extensions: 279901
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)