Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0291
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30440.1 68415.m03709 chloroplast thylakoidal processing pept...    29   2.9  
At2g18160.1 68415.m02113 bZIP transcription factor family protei...    27   8.9  

>At2g30440.1 68415.m03709 chloroplast thylakoidal processing
           peptidase identical to chloroplast thylakoidal
           processing peptidase [Arabidopsis thaliana] GI:2769566;
           contains Pfam profile PF00461: Signal peptidase I;
           non-consensus CG acceptor site at the intron|exon 8
           boundary
          Length = 340

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -3

Query: 112 NINNRSVFCRWPPRAAQSQFYHSVRLRRYASRVS 11
           NI  RSVF  WPP       YH   + R    VS
Sbjct: 307 NIVGRSVFRYWPPSKVSDTIYHDQAITRGPVAVS 340


>At2g18160.1 68415.m02113 bZIP transcription factor family protein
           contains a bZIP transcription factor basic domain
           signature (PDOC00036)
          Length = 171

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 58  EIEQLSAATGRILNDYLYLSRVYASLFTEHSVVCCSLDE 174
           +I QLS    +ILN     S++Y  +  E+SV+   ++E
Sbjct: 60  QINQLSNDNRQILNSLTVTSQLYMKIQAENSVLTAQMEE 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,392,703
Number of Sequences: 28952
Number of extensions: 249314
Number of successful extensions: 479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)