Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0290
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.78 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.4  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    22   4.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 398 TSRSPAFSESKRFVPIASSSSMKMIAGAFSLANAKASRT 282
           TS +PAFSE +  V     +S   +   F L+   A R+
Sbjct: 11  TSSAPAFSEQRGGVISEGVASSLQVVALFQLSETTAPRS 49


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 613 SGLTFILREWICIILAR 563
           SGL +I   WIC ++ R
Sbjct: 727 SGLVYIATVWICTLMNR 743


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 11  VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKF 118
           V ER  E   +IGG D      +   +  M H EK+
Sbjct: 63  VIERRLEVDCNIGGYDFPKDTFLSLFIYGMHHNEKY 98


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 554 IGMRKFDFSVQTSRSGRAGSKMSTLLVAAMTLMSAVELNP 435
           I MR++ ++    R  +A +   T  +  M     +E+NP
Sbjct: 588 ITMRRYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINP 627


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 238 SQLQKCRLCLSSASSRQQCLPCTRR 164
           + ++KCR         Q C PC  R
Sbjct: 569 NSMKKCRARYGLDQQNQWCKPCRPR 593


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 238 SQLQKCRLCLSSASSRQQCLPCTRR 164
           + ++KCR         Q C PC  R
Sbjct: 461 NSMKKCRARYGLDQQNQWCKPCRPR 485


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,738
Number of Sequences: 336
Number of extensions: 4262
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)