Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0290
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 158 8e-40
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 118 6e-28
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 118 1e-27
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 116 4e-27
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 104 1e-23
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 102 4e-23
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 88 1e-18
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 87 2e-18
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 86 5e-18
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 85 1e-17
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 78 1e-15
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 73 4e-14
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 72 7e-14
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 72 9e-14
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 72 9e-14
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 70 3e-13
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 68 1e-12
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 64 1e-11
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 60 4e-10
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 51 1e-07
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 36 0.007
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 34 0.022
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 33 0.030
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 32 0.068
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 30 0.28
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 30 0.36
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 29 0.64
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.84
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 29 0.84
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.5
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 28 1.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 27 1.9
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 1.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.9
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 2.6
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.6
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 3.4
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 26 4.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.5
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.5
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.9
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 5.9
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 26 5.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.9
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 25 7.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 7.9
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 25 7.9
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 158 bits (383), Expect = 8e-40
Identities = 82/109 (75%), Positives = 88/109 (80%)
Frame = +1
Query: 256 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 435
MFIGDGAKLVRDAFALAKEK+PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD
Sbjct: 258 MFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 317
Query: 436 GFSSTADIKVIAATNRVDILDPALPDLDVWTEKSNFLIPMKKPEPELCR 582
GFSS +KVIAATNRVD LDPAL K F +P ++ + R
Sbjct: 318 GFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILR 366
Score = 134 bits (323), Expect = 2e-32
Identities = 60/82 (73%), Positives = 71/82 (86%)
Frame = +2
Query: 11 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 190
VDE+PTE+YSDIGGL KQI+EL EA+VLPM +KF LG+ PPKG L++GPPGTGKTLL
Sbjct: 176 VDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLL 235
Query: 191 ARACAAQTKSTFLKLAGPQLVR 256
ARACAAQ+ +TFLKLA PQLV+
Sbjct: 236 ARACAAQSNATFLKLAAPQLVQ 257
Score = 84.2 bits (199), Expect = 2e-17
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFQWAPSGKA 677
P RSGRLDRK+EFP PNEEAR I++IHSRKM + D+N+EEL+RSTD++ A K+
Sbjct: 339 PALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAML-KS 397
Query: 678 VCVE 689
VCVE
Sbjct: 398 VCVE 401
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 118 bits (285), Expect = 6e-28
Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK-AGDREVQRTMLELLNQLD 435
+IG+G+++VR+ F +A+E AP+IIF+DE+D+IG+ R DS +GD EVQRTMLELLNQLD
Sbjct: 219 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLD 278
Query: 436 GFSSTADIKVIAATNRVDILDPALPDLDVWTEKSNFLIPMKKPEPELCR 582
GF +T +IKVI ATNR+DILDPAL K F P + E+ R
Sbjct: 279 GFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILR 327
Score = 97.5 bits (232), Expect = 2e-21
Identities = 50/111 (45%), Positives = 69/111 (62%)
Frame = +2
Query: 11 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 190
V++ P Y +GGL+KQI+E+ E + LP+ H E F +LGI PKG+LLYGPPGTGKTLL
Sbjct: 136 VEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLL 195
Query: 191 ARACAAQTKSTFLKLAGPQLVRCSLVMVPSLSATPLHWLKRRHQQSSSLMN 343
ARA A T F++++G +LV+ + S L + R H S M+
Sbjct: 196 ARAVAHHTDCKFIRVSGSELVQ-KYIGEGSRMVRELFVMAREHAPSIIFMD 245
Score = 58.4 bits (135), Expect = 9e-10
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFQWAPSGKA 677
P R GR+DRKIEFP P+ EARA I++IHSR MN++ ++ + ++ + A K
Sbjct: 300 PALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAEL-KG 358
Query: 678 VCVE 689
VC E
Sbjct: 359 VCTE 362
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 118 bits (283), Expect = 1e-27
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 438
++G+G ++VRD F +A+E APAIIFIDE+DAI TKRFD++ DREVQR ++ELL Q+DG
Sbjct: 208 YLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDG 267
Query: 439 FSSTADIKVIAATNRVDILDPAL 507
F A++KVI ATNR D LDPAL
Sbjct: 268 FDQGANVKVIMATNRADTLDPAL 290
Score = 99.5 bits (237), Expect = 4e-22
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +2
Query: 8 RVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTL 187
R DERP Y+D+GGLD Q QE+ EAV LP+T + + +GI PP+GVLLYGPPGTGKT+
Sbjct: 124 RPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTM 183
Query: 188 LARACAAQTKSTFLKLAGPQLVR 256
L +A A T + F+++ G + V+
Sbjct: 184 LVKAVANSTAANFIRVVGSEFVQ 206
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFP-HPNEEARARIMQIHSRKMNVSPDVNFE 626
P R GRLDRKIEFP + + R + Q + KM +SP+V+ +
Sbjct: 288 PALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLD 331
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 116 bits (278), Expect = 4e-27
Identities = 54/84 (64%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 438
++GDG +LVR F A+E +P+I+FIDE+DAIGTKR+D++ +RE+QRTMLELLNQLDG
Sbjct: 265 YLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDG 324
Query: 439 F-SSTADIKVIAATNRVDILDPAL 507
F +S DIKVI ATNR+ LDPAL
Sbjct: 325 FDTSQRDIKVIMATNRISDLDPAL 348
Score = 114 bits (275), Expect = 1e-26
Identities = 50/83 (60%), Positives = 67/83 (80%)
Frame = +2
Query: 8 RVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTL 187
++D+ PTE Y+DIGGL+ QIQE+ EAV LP+TH E + +GI PPKGV+LYG PGTGKTL
Sbjct: 181 KLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 240
Query: 188 LARACAAQTKSTFLKLAGPQLVR 256
LA+A A QT +TFL++ G +L++
Sbjct: 241 LAKAVANQTSATFLRVVGSELIQ 263
Score = 56.4 bits (130), Expect = 4e-09
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFQWA 662
P R GR+DRKI F +P+E + +I IH+ KMN+ DVN EEL + DD A
Sbjct: 346 PALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGA 400
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 104 bits (249), Expect = 1e-23
Identities = 45/83 (54%), Positives = 61/83 (73%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 438
+IG+ A+++R+ F AKE P +IF+DE+DAIG +RF + DRE+QRT++ELLNQ+DG
Sbjct: 206 YIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 265
Query: 439 FSSTADIKVIAATNRVDILDPAL 507
F K+I ATNR D LDPAL
Sbjct: 266 FDYLGQTKIIMATNRPDTLDPAL 288
Score = 89.4 bits (212), Expect = 4e-19
Identities = 41/73 (56%), Positives = 54/73 (73%)
Frame = +2
Query: 35 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 214
++ +GGL++QI+EL E + LP+ + E F+ +GI PPKGVLLYGPPGTGKTLLARA AA
Sbjct: 131 FAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASL 190
Query: 215 KSTFLKLAGPQLV 253
FLK+ +V
Sbjct: 191 GVNFLKVVSSAIV 203
Score = 51.2 bits (117), Expect = 1e-07
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTD 647
P R GRLDRKIE P PNE R I++IH K++ ++++E L + TD
Sbjct: 286 PALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTD 335
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 102 bits (245), Expect = 4e-23
Identities = 45/83 (54%), Positives = 62/83 (74%)
Frame = +2
Query: 8 RVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTL 187
+V+E+P Y D+GG +QI+ L E V LP+ E+FV LGI PPKG++LYGPPGTGKTL
Sbjct: 169 QVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTL 228
Query: 188 LARACAAQTKSTFLKLAGPQLVR 256
ARA A +T +TF+++ G +LV+
Sbjct: 229 CARAVANRTDATFIRVIGSELVQ 251
Score = 101 bits (241), Expect = 1e-22
Identities = 47/83 (56%), Positives = 60/83 (72%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 438
++G+GA++VR+ F +A+ K IIF DE+DAIG RFD GD EVQRTMLEL+ QLDG
Sbjct: 253 YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDG 312
Query: 439 FSSTADIKVIAATNRVDILDPAL 507
F +IKV+ ATNR + LD AL
Sbjct: 313 FDPRGNIKVLFATNRPNTLDEAL 335
Score = 49.2 bits (112), Expect = 6e-07
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +3
Query: 510 RSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFQWAPSGKAVCVE 689
R GR+DRK+EF P+ E RA I++IH++ M + D+ +E ++R Q ++VC E
Sbjct: 337 RPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPS-QTGAELRSVCTE 395
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 88.2 bits (209), Expect = 1e-18
Identities = 40/78 (51%), Positives = 53/78 (67%)
Frame = +2
Query: 17 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLAR 196
E P +SDIGG ++ Q+L E+V P+TH E F LG+ PPKGVLLYGPPG KT+ A+
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAK 600
Query: 197 ACAAQTKSTFLKLAGPQL 250
A A +T F+ + GP+L
Sbjct: 601 AIATETGLNFIAVKGPEL 618
Score = 75.8 bits (178), Expect = 6e-15
Identities = 35/73 (47%), Positives = 47/73 (64%)
Frame = +2
Query: 35 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 214
+S IGGL QI ++ + V LP + E F I PP+GVLLYGPPGTGKT++ RA AA+
Sbjct: 278 FSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAAEA 337
Query: 215 KSTFLKLAGPQLV 253
+ + GP +V
Sbjct: 338 NAQVFTIDGPSVV 350
Score = 70.5 bits (165), Expect = 2e-13
Identities = 33/83 (39%), Positives = 52/83 (62%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 438
F+G+ + VR F A++ +P++IF DE+DA+ R + D R + LLN+LDG
Sbjct: 622 FVGESERAVRQVFQKARQASPSVIFFDEIDALTANRGE-----DNSSDRVVAALLNELDG 676
Query: 439 FSSTADIKVIAATNRVDILDPAL 507
+ ++ V+AATNR D++DPAL
Sbjct: 677 IEALRNVLVLAATNRPDMIDPAL 699
Score = 59.3 bits (137), Expect = 5e-10
Identities = 34/95 (35%), Positives = 52/95 (54%)
Frame = +1
Query: 223 IFEAGWSTTCAMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQ 402
+F + ++G+ +R F A+ P+IIFIDE+DA+ KR +E + E
Sbjct: 341 VFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKR--TEDVSEAE-S 397
Query: 403 RTMLELLNQLDGFSSTADIKVIAATNRVDILDPAL 507
R + LL LDG ++ + VIAATNR + +D AL
Sbjct: 398 RAVATLLTLLDGMANAGKVVVIAATNRPNSIDEAL 432
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTD 647
P R GRLDR + PN EAR +I++I + KM + DV+ + ++ T+
Sbjct: 697 PALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTE 746
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 87.4 bits (207), Expect = 2e-18
Identities = 39/81 (48%), Positives = 57/81 (70%)
Frame = +2
Query: 11 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 190
V E P ++ DIGGL++ +EL E V +P+ + EKF+ G+ P KGVL +GPPGTGKTLL
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Query: 191 ARACAAQTKSTFLKLAGPQLV 253
A+A A + + F+ + GP+L+
Sbjct: 548 AKAIANECSANFISVKGPELL 568
Score = 87.0 bits (206), Expect = 2e-18
Identities = 36/73 (49%), Positives = 54/73 (73%)
Frame = +2
Query: 35 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 214
Y DIGG +Q+ ++ E V LP+ H + F ++GI PP+G+L+YGPPGTGKTL+ARA A +T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 215 KSTFLKLAGPQLV 253
+ F + GP+++
Sbjct: 283 GAFFFLINGPEIM 295
Score = 66.1 bits (154), Expect = 5e-12
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 253 AMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR-EVQRTMLELLNQ 429
+M+ G+ VRD F A+ AP ++F+DELD+I R AGD R + +LL +
Sbjct: 569 SMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKAR--GASAGDSGGGDRVVNQLLTE 626
Query: 430 LDGFSSTADIKVIAATNRVDILDPAL 507
+DG +S ++ VI ATNR D +DPAL
Sbjct: 627 MDGVNSKKNVFVIGATNRPDQIDPAL 652
Score = 65.7 bits (153), Expect = 6e-12
Identities = 34/81 (41%), Positives = 52/81 (64%)
Frame = +1
Query: 265 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 444
G+ +R AF A++ +PAIIFIDE+D+I KR EK +R + +LL +DG
Sbjct: 300 GESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKR---EKTNGEVERRVVSQLLTLMDGMK 356
Query: 445 STADIKVIAATNRVDILDPAL 507
+ +++ V+AATNR + +DPAL
Sbjct: 357 ARSNVVVMAATNRPNSIDPAL 377
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFQWA 662
P R GRLD+ I P P+EEAR I+Q R V+ DV+ ++++T F A
Sbjct: 650 PALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGA 704
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDF 653
P R GR DR+++ P+ R I++IH++ M ++ DV+ E+++ T +
Sbjct: 375 PALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGY 426
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 85.8 bits (203), Expect = 5e-18
Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +2
Query: 17 ERPTE-QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLA 193
E P++ SDIGGLD I EL+E V +P+ H E + GIHPP+GVLL+GPPG GKT+LA
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLA 225
Query: 194 RACAAQTKSTFLKLAGPQLV 253
A A + F+ ++ P +V
Sbjct: 226 NALANELGVPFISISAPSIV 245
Score = 72.1 bits (169), Expect = 7e-14
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = +2
Query: 23 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 202
P +++IG L EL A+V P+ E + ++GI P GVLL+GPPG GKTLLA+A
Sbjct: 487 PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAV 546
Query: 203 AAQTKSTFLKLAGPQLV 253
A ++K+ F+ + GP+L+
Sbjct: 547 ANESKANFISIRGPELL 563
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/83 (43%), Positives = 50/83 (60%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 438
++G+ + VR F A+ +P +IF DELDA+ +R DS V T LL +LDG
Sbjct: 566 YVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDDSLSEASSRVVNT---LLTELDG 622
Query: 439 FSSTADIKVIAATNRVDILDPAL 507
S + + VIAATNR DI+DPA+
Sbjct: 623 LSDRSGVYVIAATNRPDIIDPAM 645
Score = 59.3 bits (137), Expect = 5e-10
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +1
Query: 265 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 444
G+ K VR+ F AK AP ++FIDE+DA+ KR +++ +R + L +++L F
Sbjct: 250 GESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDEL-SFE 308
Query: 445 ST--ADIKVIAATNRVDILDPALPDLDVWTEKSNFLIPMKKPEPELCRSI 588
T + VI ATNR D LD AL + + +P + ++ R++
Sbjct: 309 KTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTM 358
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/48 (31%), Positives = 32/48 (66%)
Frame = +3
Query: 510 RSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDF 653
R+GR DR+I P+++AR +I++ ++ + +S D +F +L++ T +
Sbjct: 333 RAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGY 380
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSR 638
P R GRLD+ + P+ R I++ +++ + +VN + L R
Sbjct: 643 PAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGR 689
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 84.6 bits (200), Expect = 1e-17
Identities = 44/85 (51%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR-EVQRTMLELLNQL 432
MF+G G VRD FA A++ AP IIFIDE+DAIG R + G E + T+ +LL ++
Sbjct: 368 MFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEM 427
Query: 433 DGFSSTADIKVIAATNRVDILDPAL 507
DGF+S+ I V A TNR D+LDPAL
Sbjct: 428 DGFTSSEHIVVFAGTNRPDVLDPAL 452
Score = 61.7 bits (143), Expect = 1e-10
Identities = 29/83 (34%), Positives = 52/83 (62%)
Frame = +2
Query: 32 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQ 211
+++D+ G+D+ +E++E V + + + + LG P+G +L GPPGTGKTLLA+A A +
Sbjct: 294 KFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGE 352
Query: 212 TKSTFLKLAGPQLVRCSLVMVPS 280
FL ++G + + + + PS
Sbjct: 353 ANVPFLSVSGSEFLEMFVGVGPS 375
Score = 28.7 bits (61), Expect = 0.84
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVN 620
P R GR DR+I P+ R +I ++H + + + +++
Sbjct: 450 PALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNID 490
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 77.8 bits (183), Expect = 1e-15
Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Frame = +1
Query: 184 IAGESLRCSNKVYIFEAGWSTTCAMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 363
+AGE+ N + F +G S M++G GAK VR+ FA A+++AP+IIFIDELDAIG K
Sbjct: 320 VAGEA----NVPFFFMSG-SQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQK 374
Query: 364 RFDSEKAGDREVQRTMLELLNQLDGFSSTAD----IKVIAATNRVDILDPAL 507
R + A +++T+ +LL LDGFS D + I ATN + LDPAL
Sbjct: 375 RNARDAA---HMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPAL 423
Score = 61.3 bits (142), Expect = 1e-10
Identities = 32/72 (44%), Positives = 45/72 (62%)
Frame = +2
Query: 32 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQ 211
++SD+ G+D+ +EL E +V + F LG P+GVLL GPPGTGKT+LARA A +
Sbjct: 265 RFSDVQGVDEAKEEL-EEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGE 323
Query: 212 TKSTFLKLAGPQ 247
F ++G Q
Sbjct: 324 ANVPFFFMSGSQ 335
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 72.9 bits (171), Expect = 4e-14
Identities = 33/68 (48%), Positives = 45/68 (66%)
Frame = +2
Query: 35 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 214
+ +GGLD I +L E V+LP+ + E F + PP+GVL +GPPGTGKTL+ARA AA
Sbjct: 265 FESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAAAC 324
Query: 215 KSTFLKLA 238
S K++
Sbjct: 325 SSENKKVS 332
Score = 56.4 bits (130), Expect = 4e-09
Identities = 31/100 (31%), Positives = 51/100 (51%)
Frame = +1
Query: 208 SNKVYIFEAGWSTTCAMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAG 387
+ KV + + + ++G+ + +R F AK P+IIF DE+D + R ++
Sbjct: 328 NKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVRSSKQEQI 387
Query: 388 DREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPAL 507
+ T+L L +DG S + +I ATNR D +DPAL
Sbjct: 388 HASIVSTLLAL---MDGMESRGQVIIIGATNRPDAVDPAL 424
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSR 593
P R GR DR+ FP P+ +AR +I++IH+R
Sbjct: 422 PALRRPGRFDREFYFPLPDRDARKKIIEIHTR 453
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 72.1 bits (169), Expect = 7e-14
Identities = 31/70 (44%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Frame = +2
Query: 35 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLG--IHPPKGVLLYGPPGTGKTLLARACAA 208
+ DIGG+D+ + +L++ V+ P+ + E F G + PKG+LLYGPPG GKT+LA+A A
Sbjct: 88 FDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAK 147
Query: 209 QTKSTFLKLA 238
Q+++TF+ ++
Sbjct: 148 QSQATFINVS 157
Score = 44.4 bits (100), Expect = 2e-05
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 438
+ G+ KLV F LA++ P IIFIDE+D +R ++ + + E ++ DG
Sbjct: 165 WFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQR---QRTDHEAMAQIKAEFMSMWDG 221
Query: 439 -FSSTADIKVIAATNRVDILDPAL 507
S + + V+ ATNR +D A+
Sbjct: 222 LLSGQSRVLVLGATNRPADIDEAI 245
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 71.7 bits (168), Expect = 9e-14
Identities = 34/73 (46%), Positives = 49/73 (67%)
Frame = +2
Query: 20 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARA 199
R ++ IGGL+ I +L E V+LP+ + E F++L I PP+GVL +GPPGTGKTL+AR
Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARV 425
Query: 200 CAAQTKSTFLKLA 238
AA + K++
Sbjct: 426 LAANCSTKNQKIS 438
Score = 55.6 bits (128), Expect = 6e-09
Identities = 34/118 (28%), Positives = 58/118 (49%)
Frame = +1
Query: 208 SNKVYIFEAGWSTTCAMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAG 387
+ K+ F S + ++G+ + +R F A+ P+IIF DE+D + R ++
Sbjct: 434 NQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQEQT 493
Query: 388 DREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALPDLDVWTEKSNFLIPMKK 561
+ T+L L +DG + + VI ATNR + LDPAL + + F +P K+
Sbjct: 494 HSSIVSTLLAL---MDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQ 548
Score = 41.9 bits (94), Expect = 8e-05
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNFEELSRSTDDFQWAPSGK 674
P R GR DR+ FP PN++AR +I++I+S + P+ L+ ST + A K
Sbjct: 528 PALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPKIPESYLLHLAESTSGYGGADL-K 586
Query: 675 AVCVE 689
A+C E
Sbjct: 587 ALCTE 591
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 71.7 bits (168), Expect = 9e-14
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +2
Query: 23 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 202
P + DIGGL++ L + + LP+ E F + G+ P GVLLYGPPGTGKTLLA+A
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELF-SQGLKPRSGVLLYGPPGTGKTLLAKAV 708
Query: 203 AAQTKSTFLKLAGPQLV 253
A + F+ + GP+L+
Sbjct: 709 ATELSLEFVSIKGPELL 725
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 435
M++G+ VR+ F A+ +P +IF DELD+I R +S +G+ + R + +LL +LD
Sbjct: 727 MYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGN-VMDRVVSQLLAELD 785
Query: 436 GFSSTAD--IKVIAATNRVDILDPAL 507
S + + VI ATNR D+LDP+L
Sbjct: 786 SISKDNNKYVFVIGATNRPDLLDPSL 811
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 70.1 bits (164), Expect = 3e-13
Identities = 35/72 (48%), Positives = 45/72 (62%)
Frame = +2
Query: 35 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 214
+SDI GLD L EAV+ P E F L P +G+LL+GPPGTGKT+LARA A +
Sbjct: 378 WSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVATEA 436
Query: 215 KSTFLKLAGPQL 250
K+TF ++ L
Sbjct: 437 KATFFSISASSL 448
Score = 48.8 bits (111), Expect = 7e-07
Identities = 30/94 (31%), Positives = 48/94 (51%)
Frame = +1
Query: 214 KVYIFEAGWSTTCAMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 393
K F S+ + ++GD KLVR F +AK + ++IF+DE+D+I + R DS +
Sbjct: 437 KATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNEHES 496
Query: 394 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 495
+R E L Q ++ A K + RV +L
Sbjct: 497 S-RRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVL 529
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = +2
Query: 17 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLAR 196
E+P ++ DI GL+ + L E V+LP+ + F + G P G+LLYGPPGTGK+ LA+
Sbjct: 122 EKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAK 180
Query: 197 ACAAQTKSTFLKLAGPQLV 253
A A + STF ++ LV
Sbjct: 181 AVATEAGSTFFSISSSDLV 199
Score = 53.6 bits (123), Expect = 3e-08
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +1
Query: 226 FEAGWSTTCAMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQR 405
F S + ++G+ +LVR F +A+E+ P+IIFIDE+D++ R + E R ++
Sbjct: 191 FSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIK- 249
Query: 406 TMLELLNQLDGF-SSTADIKVIAATNRVDILDPAL 507
E L Q++G + + V+ ATN LD A+
Sbjct: 250 --TEFLVQMNGVGKDESGVLVLGATNIPWTLDSAI 282
Score = 32.3 bits (70), Expect = 0.068
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 519 RLDRKIEFPHPNEEARARIMQIHSRKM-NVSPDVNFEELSRSTDDF 653
R +++I P PN ARAR+ +++ K+ + +F+EL++ TD +
Sbjct: 285 RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGY 330
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 64.5 bits (150), Expect = 1e-11
Identities = 32/72 (44%), Positives = 44/72 (61%)
Frame = +2
Query: 35 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 214
+ DI GL+ L EAVV P + F L P +G+LL+GPPGTGKT+LARA A ++
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVATES 516
Query: 215 KSTFLKLAGPQL 250
+S F ++ L
Sbjct: 517 RSVFFSISASSL 528
Score = 48.4 bits (110), Expect = 1e-06
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +1
Query: 226 FEAGWSTTCAMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQR 405
F S+ + F+G+ KLVR F LAK+ +P+IIF+DE+D++ + R S + E R
Sbjct: 521 FSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSAR--SSDGNEHETSR 578
Query: 406 TM-LELLNQLDGFSSTADIKVIAATNRVDIL 495
+ E L Q + A + A RV +L
Sbjct: 579 RIKTEFLIQWSSLARAAASRQTADHPRVLVL 609
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 59.7 bits (138), Expect = 4e-10
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF-DSEKAGDREVQRTMLELLNQLD 435
+IG + VRD F+ A+ P ++F DE D++ +R DS DR V ++L Q+D
Sbjct: 680 YIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVVN----QILTQMD 735
Query: 436 GFSSTADIKVIAATNRVDILDPAL 507
G S + ++AAT R D++DPAL
Sbjct: 736 GAESLDGVYIVAATTRPDMIDPAL 759
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +2
Query: 32 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQ 211
++ DI G+ + + + + + P+ + + + P G+LL+G PG GKT LA A ++
Sbjct: 604 RWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISST 663
Query: 212 TKSTFLKLAGPQLV 253
F+ + GP+L+
Sbjct: 664 FPVQFISIKGPELL 677
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 498 PCPARSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELSRSTDDFQWA 662
P R GRLD+ I PNEE R ++Q + + ++ ++LS TD + +A
Sbjct: 757 PALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYA 811
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 51.2 bits (117), Expect = 1e-07
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 44 IGGLDKQIQELIEAVVLPMTHKEKFVN-LGIHPPKGVLLYGPPGTGKTLLARACAAQTKS 220
IGGLD + + V LGI+ KG+LLYGPPGTGKTL+AR +
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNA 330
Query: 221 TFLKLA-GPQLV 253
K+ GP+++
Sbjct: 331 REPKIVNGPEIL 342
Score = 44.0 bits (99), Expect = 2e-05
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Frame = +1
Query: 259 FIGDGAKLVRDAFALAK--------EKAPAIIFIDELDAIGTKRFDSEKAGDREV-QRTM 411
++G + VR FA A+ E II DELDAI KR S GD V + +
Sbjct: 345 YVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSS--GGDTGVGDQVV 402
Query: 412 LELLNQLDGFSSTADIKVIAATNRVDILDPAL 507
+LL ++DG +I VI TNR D++D AL
Sbjct: 403 NQLLAKMDGVDQLNNILVIGMTNRKDMIDEAL 434
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +3
Query: 510 RSGRLDRKIEFPHPNEEARARIMQIHSRKMN----VSPDVNFEELSRSTDDFQWA 662
R GRL+ +E P+E R +I++IH+ +M + DV+ EEL+ T +F A
Sbjct: 436 RPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGA 490
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 149 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ 247
VLL GP +GKT LA A ++ F+KL +
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVKLVSAE 620
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2
Query: 149 VLLYGPPGTGKTLLARACAAQTKSTFLKLA 238
++L+G GTGKT LAR A TKS F++++
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTKSRFIEIS 152
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 33.9 bits (74), Expect = 0.022
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +2
Query: 110 EKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 205
EKF++ P +L YGPPGTGKT ACA
Sbjct: 48 EKFISSNRVPH--MLFYGPPGTGKTSTILACA 77
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 33.5 bits (73), Expect = 0.030
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +1
Query: 322 AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDP 501
A++ ++++D+ R S + G T LLN LDG +S+ + + TN + LDP
Sbjct: 296 AVVLLEDVDSAFQGRERSGEVGFH-ANVTFSGLLNALDGVTSSDERIIFMTTNHPEKLDP 354
Query: 502 AL 507
AL
Sbjct: 355 AL 356
Score = 33.1 bits (72), Expect = 0.039
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 128 GIHPPKGVLLYGPPGTGKTLLARACAAQ 211
GI +G LLYGPPG+GKT A A +
Sbjct: 238 GIPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 32.3 bits (70), Expect = 0.068
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 137 PPKGVLLYGPPGTGKTLLARACAAQ-TKSTFLKLAGP 244
PP V + GPPGTGK+ L ++ + +K T ++ GP
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGP 109
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 30.3 bits (65), Expect = 0.28
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -2
Query: 344 SSSMKMIAGAFSLANAKASRTSLAPSPMNIAQVVDQPASKM*TLFEQRKLSPAMSSLY 171
S+S + S A ++ TSLA S N+A + QP++ QR L ++ SLY
Sbjct: 166 STSSATVTNVTSKKEAISATTSLAQSSPNLASLSKQPSTVHAPSTRQRDLKSSILSLY 223
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 421 LNQLDGFSSTADIKVIAATNRVDILDPALPDLDVWTEKSNFLIPMKKPEPELCRSIP 591
L QLDGF AD V +DP P L +++ N I +P +L R +P
Sbjct: 84 LLQLDGFDKKADQLYTQGLRMVHKMDPLRPVLKKVSQRLNERILRTRPVLDLFRILP 140
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 143 KGVLLYGPPGTGKTLLARACAAQ--TKSTFLKLAGPQL 250
KGVL G GTGKT LA A A + K F + G ++
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEV 102
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 137 PPKGVLLYGPPGTGKTLLARACAA 208
P L GP GTGKTLL +A A+
Sbjct: 613 PIASFLFCGPSGTGKTLLTKALAS 636
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.7 bits (61), Expect = 0.84
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 125 LGIHPPKGVLLYGPPGTGKTLLARACA 205
LG++ K VLL GPPG GKT A A
Sbjct: 406 LGLY--KAVLLSGPPGIGKTTAAHLVA 430
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 143 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 235
K +LL G PG GKT L A A +T +++
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGHQLVRI 1590
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/101 (22%), Positives = 48/101 (47%)
Frame = -2
Query: 530 SVQTSRSGRAGSKMSTLLVAAMTLMSAVELNPSSWFNNSNIVRCTSRSPAFSESKRFVPI 351
S +S S + S S+ ++++ + S+ + SS ++S+ +S SP + S
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSS---SSSSSPTSTSSTISSSS 311
Query: 350 ASSSSMKMIAGAFSLANAKASRTSLAPSPMNIAQVVDQPAS 228
+SSSS + S++++ + +S S I+ P+S
Sbjct: 312 SSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/88 (26%), Positives = 43/88 (48%)
Frame = -2
Query: 530 SVQTSRSGRAGSKMSTLLVAAMTLMSAVELNPSSWFNNSNIVRCTSRSPAFSESKRFVPI 351
S +S S + S STL ++M+ S+ +P+S +S+ + +S SP+ S
Sbjct: 305 STISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTS---SSSTISSSSSSPSSSSFSSTTSS 361
Query: 350 ASSSSMKMIAGAFSLANAKASRTSLAPS 267
+ SSS + S + + ++ TS + S
Sbjct: 362 SKSSSSFSSTVSSSSSTSSSTLTSSSSS 389
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 409 MLELLNQLDGFSSTADIKVI-AATNRVD-ILDPALPDLDVWTEKSNFLIPMKK 561
+LE + QLD A+ ++I + + VD I D LD W+E L+P+KK
Sbjct: 254 LLEEILQLDSAYDAAERRMIESGWSSVDEIRDVHNKRLDAWSEWKQKLLPLKK 306
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 113 KFVNLGIHPPKGVLLYGPPGTGKTLLARACA 205
K + G + +L+ GPP TGKT +A A
Sbjct: 56 KMIQEGRIAGRAILMAGPPSTGKTAIAMGMA 86
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 113 KFVNLGIHPPKGVLLYGPPGTGKTLL 190
+F+N + + V+ GPPG+GK++L
Sbjct: 2504 EFLNFSLTKNRCVIFCGPPGSGKSML 2529
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 107 KEKFVNLGIHPPKGVLLYGPPGTGKT 184
++K V I + L++GPPGTGKT
Sbjct: 214 QKKAVKFSIAVKELSLIHGPPGTGKT 239
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 140 PKGVLLYGPPGTGKTLL 190
PKG+ LYG G GKT L
Sbjct: 118 PKGIYLYGDVGCGKTAL 134
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.9
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -2
Query: 521 TSRSGRAGSKMSTLLVAAMTLMSAVELNPSSWFNNSNIVRCTS--RSPAFSESKRFVPIA 348
TS S + S S+ +A+ + S +P+S S+ +S S S S I
Sbjct: 76 TSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSIT 135
Query: 347 SSSSMKMIAGAFSLANAKASRTSLAPSPMN 258
SSS + SLA++ + +SLA S N
Sbjct: 136 SSSLASSSITSSSLASSSTTSSSLASSSTN 165
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 149 VLLYGPPGTGKTLLARACAAQTK 217
+++ G PGTGKT LA A T+
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTE 33
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 143 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLA 238
K + L GPPG GKT + ++ A+ F + +
Sbjct: 572 KIMCLVGPPGVGKTSVGKSIASALNREFFRFS 603
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = -2
Query: 425 FNNSNIVRCTSRSPAFSESKRFVPIASSSSMKMIAGAFSLANAKASRTSLAPSPMNIAQV 246
+ ++ VRC++ FS+ K +P A+ ++ + A ++ SL P + +V
Sbjct: 486 YQSTCFVRCSTGQKTFSDLKTVLPTATLAADYISMIVLFRLMANFTKISLQTFPKSFKEV 545
Query: 245 VDQ-PASKM*T-LFEQRKLSPAMSSLYQEVHIK 153
+ A K T L E K+S + S+ + ++
Sbjct: 546 YGKFSAEKQNTDLAEDAKISEKLDSIIKSKELE 578
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 26.2 bits (55), Expect = 4.5
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = -1
Query: 672 CHWAPIENHQSN 637
CH+AP++NHQ++
Sbjct: 479 CHFAPVDNHQTS 490
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 262 IGDG-AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD- 435
+GDG A+ + D +A +I E DA+G FD AGD V+ L +Q+D
Sbjct: 273 LGDGTAEALYDTYAGVYITGISISGYVE-DAVGYYSFDFTTAGDTSVEPLFFLLPHQVDT 331
Query: 436 GFSSTADIKVIAAT 477
S T ++ A+
Sbjct: 332 AVSGTKVTSIVLAS 345
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 4.5
Identities = 31/126 (24%), Positives = 58/126 (46%)
Frame = -2
Query: 554 IGMRKFDFSVQTSRSGRAGSKMSTLLVAAMTLMSAVELNPSSWFNNSNIVRCTSRSPAFS 375
I +S S + A S + T ++ + S+ PSS ++S+ +S S + S
Sbjct: 116 ISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSS-TPSSSSSSSSSSPSSSSSKSSS 174
Query: 374 ESKRFVPIASSSSMKMIAGAFSLANAKASRTSLAPSPMNIAQVVDQPASKM*TLFEQRKL 195
SK +SSSS + + S +++K+S +S + S + + + +SK +
Sbjct: 175 SSKS----SSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITST 230
Query: 194 SPAMSS 177
+PA SS
Sbjct: 231 TPASSS 236
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/80 (23%), Positives = 35/80 (43%)
Frame = +2
Query: 251 VRCSLVMVPSLSATPLHWLKRRHQQSSSLMNWTLLVQSVLIQKRLETVRCSVLCWSC*TS 430
+RC + + P+ A + W K++ + L W + + + +L + LC C +
Sbjct: 35 LRCPIWLWPTYDAQTIPWKKKKKSEQHEL--WASVYNRTIGKLQLNKLTFIDLC-DCFLN 91
Query: 431 LMGLAQLLTSRSLQLPIEWT 490
L+ L + S PIE T
Sbjct: 92 PTLLSNLFAAFSGYYPIEVT 111
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 594 KMNVSPDVNFEELSRSTDDFQW 659
K++ SP+ +FE +S+ + DF W
Sbjct: 266 KLHQSPEPHFELISKYSGDFPW 287
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 149 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVR 256
+L YG PGTGKT A + + L GPQL++
Sbjct: 55 MLFYGSPGTGKTSTILALSRE-------LFGPQLMK 83
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 428 WFNNSNIVRCTSRSPAFSESKRFVPIASSS 339
W + I +CT+ FS K +P A S
Sbjct: 223 WISKCEISKCTTTEDIFSYLKNLIPSAEKS 252
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 440 NPSSWFNNSNIVRCTSRSPAFSESKRFVPIAS 345
+P +WF++ + S SP FS +PI++
Sbjct: 488 SPQNWFSSFSYQTPNSASPPFSSLSHTLPISA 519
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2
Query: 152 LLYGPPGTGKTL 187
L+ GPPGTGKT+
Sbjct: 411 LIQGPPGTGKTV 422
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 11 VDERPTEQYSDIGGLDKQIQELIEAV 88
V+ PT ++S +G K IQE+IEA+
Sbjct: 200 VESVPTCRHSKLGEPSKTIQEVIEAL 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,156
Number of Sequences: 5004
Number of extensions: 72161
Number of successful extensions: 355
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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