Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0290
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.90 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.90 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 167 EVHIKELLWVGGCRDSQISPC 105
           ++  +EL+W  G +D  IS C
Sbjct: 429 DIRTEELIWARGTKDIPISAC 449


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 167 EVHIKELLWVGGCRDSQISPC 105
           ++  +EL+W  G +D  IS C
Sbjct: 519 DIRTEELIWARGTKDIPISAC 539


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 350 LLVQSVLIQKRLETVRCSVLCWSC*TSLMGLAQLLTSRSLQLPIE--WTFWTLPCQIW 517
           L+  +V + ++L    C+ L  S   S + +A L+   +L   I   W+F T+ C +W
Sbjct: 61  LVCVAVFLVRKLRRP-CNYLLVSLAVSDLCVALLVMPMALLYEISGNWSFGTIMCDLW 117


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 431 LMGLAQLLTSRSLQLPIEWTFWTLPCQIW 517
           ++GLA L  S + ++   W F  L C IW
Sbjct: 113 MVGLAVLPFSATWEVFKVWIFGDLWCSIW 141


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 570 WLGLLHWDEEIRFFG 526
           W+G+LH DE    FG
Sbjct: 491 WMGVLHGDEVEYVFG 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,826
Number of Sequences: 438
Number of extensions: 5352
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)