Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0289
(687 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O60264 Cluster: SWI/SNF-related matrix-associated actin... 82 1e-14
UniRef50_Q4JLR9 Cluster: Chromatin-remodelling complex ATPase IS... 52 1e-05
UniRef50_Q7G8Y3 Cluster: Probable chromatin-remodeling complex A... 47 4e-04
UniRef50_A0CVG3 Cluster: Chromosome undetermined scaffold_29, wh... 40 0.057
UniRef50_A6L950 Cluster: Putative capsule biosynthesis protein; ... 38 0.23
UniRef50_Q54CI4 Cluster: Myb domain-containing protein; n=1; Dic... 37 0.40
UniRef50_Q1JSB2 Cluster: SWI/SNF family transcriptional activato... 37 0.53
UniRef50_Q801N8 Cluster: LOC398577 protein; n=1; Xenopus laevis|... 36 0.93
UniRef50_UPI00006CC469 Cluster: SNF2 family N-terminal domain co... 36 1.2
UniRef50_A3Y7M5 Cluster: Molybdopterin-guanine dinucleotide bios... 35 2.1
UniRef50_A0CWB9 Cluster: Chromosome undetermined scaffold_3, who... 34 3.7
UniRef50_UPI00006A0293 Cluster: Neurobeachin-like 1 (Amyotrophic... 33 6.5
>UniRef50_O60264 Cluster: SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member
5; n=125; Eukaryota|Rep: SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
subfamily A member 5 - Homo sapiens (Human)
Length = 1052
Score = 82.2 bits (194), Expect = 1e-14
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V+EYSAVFWERC+ELQDI++IM QIERGEA+IQRR SIKKALD K
Sbjct: 880 VIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTK 924
Score = 60.9 bits (141), Expect = 3e-08
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +2
Query: 257 MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
+ RY+APFHQLRISYGTNKGKNY EEEDR
Sbjct: 925 IGRYKAPFHQLRISYGTNKGKNYTEEEDR 953
>UniRef50_Q4JLR9 Cluster: Chromatin-remodelling complex ATPase ISWI2;
n=2; Chlorophyta|Rep: Chromatin-remodelling complex
ATPase ISWI2 - Chlamydomonas reinhardtii
Length = 1086
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V EY+ VFW+R EL D ++++ IERGE KIQR+ I A+ AK
Sbjct: 884 VREYAKVFWQRYRELADYEKVIKNIERGEQKIQRQQDIMNAIAAK 928
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 257 MARYRAPFHQLRISYGTNKGKNYVEEEDRSI 349
+ RY+ P+ +L+I YG NKGK Y EEEDR I
Sbjct: 929 LERYKNPWQELKIQYGANKGKAYTEEEDRFI 959
>UniRef50_Q7G8Y3 Cluster: Probable chromatin-remodeling complex ATPase
chain; n=15; Eukaryota|Rep: Probable chromatin-remodeling
complex ATPase chain - Oryza sativa subsp. japonica
(Rice)
Length = 1107
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V Y+ VF ER EL D DRI+ IERGEA+I R+ I +A+ K
Sbjct: 917 VQRYAKVFKERYKELSDYDRIIKNIERGEARISRKDEIMRAIGKK 961
Score = 39.9 bits (89), Expect = 0.057
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 242 SVGR*MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
++G+ + RY+ P+ +L+I YG NKGK Y EE DR
Sbjct: 957 AIGKKLDRYKNPWLELKIQYGQNKGKFYNEECDR 990
>UniRef50_A0CVG3 Cluster: Chromosome undetermined scaffold_29, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_29,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1014
Score = 39.9 bits (89), Expect = 0.057
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V Y+ FWER L + D+I+ QIERG+ I+++ + +K ++ K
Sbjct: 833 VKTYAQAFWERIDGLSEKDKIVKQIERGQKLIEQKTNGQKLIEEK 877
>UniRef50_A6L950 Cluster: Putative capsule biosynthesis protein;
n=1; Parabacteroides distasonis ATCC 8503|Rep: Putative
capsule biosynthesis protein - Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC11152)
Length = 415
Score = 37.9 bits (84), Expect = 0.23
Identities = 16/50 (32%), Positives = 33/50 (66%)
Frame = -2
Query: 275 VLGTAPFSVQRFLNRGSSLNFSLAPFDLAHNSIYILKFVATFPKYS*VLH 126
++G P VQ+F+++G + +SL F ++ +S+Y+++ P+YS +LH
Sbjct: 284 IVGNHPHVVQKFVDKGCLVAYSLGNFSISPSSLYLVR--ENLPEYSVLLH 331
>UniRef50_Q54CI4 Cluster: Myb domain-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: Myb domain-containing
protein - Dictyostelium discoideum AX4
Length = 1221
Score = 37.1 bits (82), Expect = 0.40
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V +YS FW++ E+ D ++++ +IE+GE +I + + +L+ K
Sbjct: 968 VQQYSQAFWKKHSEVADHEKLVARIEKGEERIMKYKETQDSLNYK 1012
Score = 34.7 bits (76), Expect = 2.1
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 263 RYRAPFHQLRISYGTNKGKNYVEEED 340
+Y+ P+ +L+I YG K KNY +EED
Sbjct: 1015 KYKNPWIELKIQYGLKKNKNYNDEED 1040
>UniRef50_Q1JSB2 Cluster: SWI/SNF family transcriptional activator
protein, putative; n=1; Toxoplasma gondii|Rep: SWI/SNF
family transcriptional activator protein, putative -
Toxoplasma gondii
Length = 1383
Score = 36.7 bits (81), Expect = 0.53
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKAL 248
V YS VFW R E+Q ++ + +IE GEA I +R +++ +
Sbjct: 1159 VAAYSRVFWSRYPEIQGWEKWIRRIEEGEAVINKRRELEQVI 1200
>UniRef50_Q801N8 Cluster: LOC398577 protein; n=1; Xenopus
laevis|Rep: LOC398577 protein - Xenopus laevis (African
clawed frog)
Length = 936
Score = 35.9 bits (79), Expect = 0.93
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +3
Query: 156 CHELQDIDRIMGQIERGEAKIQRRASIKKALDAKWRGTEHHST--NLE 293
C EL +ID++ GQ+E+ + ++ A++K+ DAK +HH T NLE
Sbjct: 73 CEELTEIDKLAGQLEKDKERL-LDAAVKELEDAKNEIHQHHRTIENLE 119
>UniRef50_UPI00006CC469 Cluster: SNF2 family N-terminal domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: SNF2 family N-terminal domain containing
protein - Tetrahymena thermophila SB210
Length = 1254
Score = 35.5 bits (78), Expect = 1.2
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRR 227
V +YS FWER + + D+I+ IERGE ++++
Sbjct: 875 VSQYSKAFWERIDTISEKDKIIKNIERGEQILKQK 909
>UniRef50_A3Y7M5 Cluster: Molybdopterin-guanine dinucleotide
biosynthesis protein A; n=1; Marinomonas sp. MED121|Rep:
Molybdopterin-guanine dinucleotide biosynthesis protein
A - Marinomonas sp. MED121
Length = 191
Score = 34.7 bits (76), Expect = 2.1
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 275 PFHQ-LRISYGTNKGKNYVEEEDRSIFKFQAINTKTIIKQDHSIFININ 418
P H L ++ +K K Y++ E R +F ++ + K + QD S F+NIN
Sbjct: 137 PLHAILPVAGVADKLKQYLKSEARVMFFYRQLGAKAVYWQDESAFLNIN 185
>UniRef50_A0CWB9 Cluster: Chromosome undetermined scaffold_3, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_3,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 432
Score = 33.9 bits (74), Expect = 3.7
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -1
Query: 510 STACASSK--VCPSLSRAV*LMTVKGTVDVLLLLMFINIEWSCFIIVLVLIA 361
S + AS K + PS RA +++ +D+L MFI + W+ +++ +L+A
Sbjct: 213 SISAASEKMLILPSFKRA--FRSIESIMDLLTFSMFIGVSWAYMVVIAILLA 262
>UniRef50_UPI00006A0293 Cluster: Neurobeachin-like 1 (Amyotrophic
lateral sclerosis 2 chromosomal region candidate gene 17
protein).; n=2; Xenopus tropicalis|Rep: Neurobeachin-like
1 (Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 17 protein). - Xenopus tropicalis
Length = 1961
Score = 33.1 bits (72), Expect = 6.5
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 129 EYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAKWRGTEHHSTN-LESLME 305
E A +W+ C+E Q ++ + ERGE+K++ + + + K R N L+ +
Sbjct: 947 EQMATYWKECYEAQMVNMHKRERERGESKLKFKEFFLEPFNRKTRQENSRYNNMLKQVNS 1006
Query: 306 QTRAKIMLKRKTGQYL 353
Q A + + +YL
Sbjct: 1007 QYTATLRQWKAAQRYL 1022
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,255,970
Number of Sequences: 1657284
Number of extensions: 10987718
Number of successful extensions: 27862
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27857
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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