Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0289
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    27   1.9  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   2.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   4.4  

>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 338 DRSIFKFQAINTKTIIKQDHSIFININKSKTSTVPFTVIS*TAR-ERDGQT 487
           D   +K    +    I++D    IN+++   +T+PF ++S     E +GQT
Sbjct: 220 DIEYYKIPVYDFPYDIEEDEEAIINLSQQLRATIPFAIVSSDRLIEMNGQT 270


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 153 RCHELQDIDRIMGQIERGEAKIQRRASIKKALDAKWRGTEHHSTNLESLMEQTR 314
           R  ELQD  R + +++      +RR     A D K+ G       +E L +Q R
Sbjct: 472 RGSELQDAKRRLDELKAKAEDAERRNDFTLAADLKYYGIPDLQKRIEYLEQQKR 525


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 278  FHQLRISYGTNKGKNYVEEEDRSIFKF-QAINTKTIIKQDHSIFININKSKTST 436
            +H+L  +YG  +      E D +I  + + +    IIK ++ +F N N+ K+ T
Sbjct: 1059 YHKLLWNYGAAEVCATKSELDGAICHYSECVKLLEIIKSEYYLFFNRNREKSLT 1112


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 343  PVFLFNIIFALVCSIRDSKLVEWCSVPRHLASNAFLIEA 227
            P F F I F LV      +    CSV +H+A+  + I +
Sbjct: 2000 PFFFFGISFILVAITHFFQKTTACSVIQHIAAYVYAISS 2038


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,534
Number of Sequences: 5004
Number of extensions: 47650
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)