Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0289
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 47 1e-05
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 47 2e-05
07_03_1013 + 23299569-23300630 33 0.28
04_04_0441 - 25226870-25228327 31 0.65
03_01_0378 + 2943605-2943690,2943774-2943920,2944607-2944675,294... 29 2.6
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611... 28 8.0
09_02_0409 - 8656136-8656318,8656469-8656609,8658608-8658756,865... 28 8.0
03_05_0750 - 27383848-27383940,27384016-27384137,27384525-273845... 28 8.0
>01_04_0010 - 15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V Y+ VF ER EL D DRI+ IERGEA+I R+ I +A+ K
Sbjct: 932 VQRYAKVFKERYKELSDYDRIIKNIERGEARISRKDEIMRAIGKK 976
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 242 SVGR*MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
++G+ + RY+ P+ +L+I YG NKGK Y EE DR
Sbjct: 972 AIGKKLDRYKNPWLELKIQYGQNKGKFYNEECDR 1005
>05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V Y+ VF ER EL D DR++ IE+GEA+I R+ I KA+ K
Sbjct: 973 VQRYAKVFQERYKELNDYDRVIKNIEKGEARIYRKDEIMKAIGKK 1017
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +2
Query: 239 ESVGR*MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
+++G+ + RY+ P+ +L+I YG NKGK Y EE DR
Sbjct: 1012 KAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDR 1046
>07_03_1013 + 23299569-23300630
Length = 353
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 159 HELQDIDRIMGQIERGEAKIQRRASIKKALDAKWRGTEHHSTNLESLMEQTRAKIMLKRK 338
++ +D D GQ + GE K + +K + K+ EH S + + T+ K +RK
Sbjct: 191 NQYEDEDNTTGQYQDGEQKTAEQCEEEKTSE-KYHNEEHKSLEAQQQCQDTKQKAQEQRK 249
Query: 339 T 341
T
Sbjct: 250 T 250
>04_04_0441 - 25226870-25228327
Length = 485
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 126 MEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAKWRGTEHHS-TNLESLM 302
+E SAV E + + +MG+ E+GEA ++ I +A+ A W G S +LE +
Sbjct: 412 LESSAV--ESGEVAEAVGAVMGETEKGEAMRRKAGEIARAMAAAWEGPAGSSAASLERFL 469
Query: 303 EQTRAKIM 326
A +
Sbjct: 470 RCVEASAL 477
>03_01_0378 +
2943605-2943690,2943774-2943920,2944607-2944675,
2944758-2944923,2945000-2945228,2945335-2945888
Length = 416
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 165 LQDID-RIMGQIERGEAKIQRRASIKKALDAKW-RGTEHHSTNLESLMEQTRAKIMLKRK 338
+Q+ID R G+ EA+ R ++ AL+ + RGT +S+ + S+ E AKI L
Sbjct: 90 VQEIDLRAQGKRGTHEARCVSRTALLLALEEELPRGTIRYSSKIVSIEEDGNAKI-LHLS 148
Query: 339 TGQYLSFKQLI 371
G L K LI
Sbjct: 149 DGSTLRAKVLI 159
>12_02_0709 -
22359705-22360292,22360396-22360560,22360650-22361157,
22361159-22361577,22362261-22362722,22362853-22364415
Length = 1234
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 138 AVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAKWRGTEHHSTNLESLMEQTRA 317
A+F +R + +D+D + G+I RG++ ++ +D + +E L L TR
Sbjct: 599 AIFEKRIRDGKDLDTLAGEIARGDSASSFVGKLRTMVD---QNSEQTVNCLRILKIATRM 655
Query: 318 KIMLKRKTGQY 350
I L + G Y
Sbjct: 656 IISLLKLEGCY 666
>09_02_0409 -
8656136-8656318,8656469-8656609,8658608-8658756,
8658830-8658987,8659326-8659409,8659654-8659787,
8661255-8661389,8662159-8662551
Length = 458
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 528 IHKHYTSAT-CECVKLHGRRRGVLGLFSLR 614
+H YT + C C+ +H R+G++ ++ +R
Sbjct: 374 LHTEYTKSDYCLCLAIHAPRKGIIEIWQMR 403
>03_05_0750 -
27383848-27383940,27384016-27384137,27384525-27384578,
27384682-27384783,27386838-27387087
Length = 206
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 628 RAAGAQKPRDKWLWHS 675
RA G+ + RD W WHS
Sbjct: 55 RACGSSRERDGWAWHS 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,944,155
Number of Sequences: 37544
Number of extensions: 298434
Number of successful extensions: 678
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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