Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0289
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038)       77   1e-14
SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_27315| Best HMM Match : Drf_FH1 (HMM E-Value=2.1)                   28   6.2  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                28   8.1  

>SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038)
          Length = 459

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 37/48 (77%), Positives = 41/48 (85%)
 Frame = +3

Query: 114 PL*VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
           P  V EY+AVFWER  ELQD++RIM QIERGE+KIQRR SIKKALDAK
Sbjct: 116 PQEVREYAAVFWERNDELQDLERIMAQIERGESKIQRRISIKKALDAK 163



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/29 (89%), Positives = 27/29 (93%)
 Frame = +2

Query: 257 MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
           MARYR+PFHQLRI YGTNKGKNY EEEDR
Sbjct: 164 MARYRSPFHQLRIQYGTNKGKNYTEEEDR 192


>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 685 VF*SYAIAIYRGAFEHRPHEIKKFRNENKPNTPLRLPCSLTH 560
           VF  + + IYR    H    I + R+ N+  T L   CS+ H
Sbjct: 371 VFSDWGVVIYRDRAGHWSASINRSRDPNQAGTFLSFKCSVLH 412


>SB_27315| Best HMM Match : Drf_FH1 (HMM E-Value=2.1)
          Length = 300

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 211 LKFNDEPLLRKRWTLNGAVPSTIPPT*NLLWNKQGQK 321
           L+ N + +LRKR+     V +  PP   L+WN++G++
Sbjct: 7   LQVNKKAILRKRYAYLRLVKA--PPIDQLMWNRRGKR 41


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 661  IYRGAFEHRPHEI-KKFRNENKPNTP 587
            I RG+  H+PH++ K ++N+ K N P
Sbjct: 1160 IERGSKHHKPHKVSKNYKNKAKKNHP 1185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,598,434
Number of Sequences: 59808
Number of extensions: 349536
Number of successful extensions: 829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)