Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0289
(687 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L27127-1|AAA19868.1| 1027|Drosophila melanogaster ISWI protein p... 83 5e-16
AY094908-1|AAM11261.1| 1027|Drosophila melanogaster RH13158p pro... 83 5e-16
AE013599-1548|AAM68638.1| 1027|Drosophila melanogaster CG8625-PC... 83 5e-16
AE013599-1547|AAM68637.1| 1027|Drosophila melanogaster CG8625-PB... 83 5e-16
AE013599-1546|AAF58479.1| 1027|Drosophila melanogaster CG8625-PA... 83 5e-16
AY061226-1|AAL28774.1| 388|Drosophila melanogaster LD16783p pro... 29 4.5
AE014298-4|AAF45486.2| 388|Drosophila melanogaster CG3038-PA, i... 29 4.5
AE014298-3|AAN09009.1| 358|Drosophila melanogaster CG3038-PB, i... 29 4.5
>L27127-1|AAA19868.1| 1027|Drosophila melanogaster ISWI protein
protein.
Length = 1027
Score = 82.6 bits (195), Expect = 5e-16
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V+EY+AVFWERC ELQDI+RIMGQIERGE KIQRR SIKKALD K
Sbjct: 835 VIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQK 879
Score = 56.4 bits (130), Expect = 3e-08
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 257 MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
M+RYRAPFHQLR+ YG NKGKNY E EDR
Sbjct: 880 MSRYRAPFHQLRLQYGNNKGKNYTEIEDR 908
>AY094908-1|AAM11261.1| 1027|Drosophila melanogaster RH13158p
protein.
Length = 1027
Score = 82.6 bits (195), Expect = 5e-16
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V+EY+AVFWERC ELQDI+RIMGQIERGE KIQRR SIKKALD K
Sbjct: 835 VIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQK 879
Score = 56.4 bits (130), Expect = 3e-08
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 257 MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
M+RYRAPFHQLR+ YG NKGKNY E EDR
Sbjct: 880 MSRYRAPFHQLRLQYGNNKGKNYTEIEDR 908
>AE013599-1548|AAM68638.1| 1027|Drosophila melanogaster CG8625-PC,
isoform C protein.
Length = 1027
Score = 82.6 bits (195), Expect = 5e-16
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V+EY+AVFWERC ELQDI+RIMGQIERGE KIQRR SIKKALD K
Sbjct: 835 VIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQK 879
Score = 56.4 bits (130), Expect = 3e-08
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 257 MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
M+RYRAPFHQLR+ YG NKGKNY E EDR
Sbjct: 880 MSRYRAPFHQLRLQYGNNKGKNYTEIEDR 908
>AE013599-1547|AAM68637.1| 1027|Drosophila melanogaster CG8625-PB,
isoform B protein.
Length = 1027
Score = 82.6 bits (195), Expect = 5e-16
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V+EY+AVFWERC ELQDI+RIMGQIERGE KIQRR SIKKALD K
Sbjct: 835 VIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQK 879
Score = 56.4 bits (130), Expect = 3e-08
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 257 MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
M+RYRAPFHQLR+ YG NKGKNY E EDR
Sbjct: 880 MSRYRAPFHQLRLQYGNNKGKNYTEIEDR 908
>AE013599-1546|AAF58479.1| 1027|Drosophila melanogaster CG8625-PA,
isoform A protein.
Length = 1027
Score = 82.6 bits (195), Expect = 5e-16
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = +3
Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
V+EY+AVFWERC ELQDI+RIMGQIERGE KIQRR SIKKALD K
Sbjct: 835 VIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQK 879
Score = 56.4 bits (130), Expect = 3e-08
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 257 MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
M+RYRAPFHQLR+ YG NKGKNY E EDR
Sbjct: 880 MSRYRAPFHQLRLQYGNNKGKNYTEIEDR 908
>AY061226-1|AAL28774.1| 388|Drosophila melanogaster LD16783p
protein.
Length = 388
Score = 29.5 bits (63), Expect = 4.5
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 652 GAFEHRPHEIKKFRNENKPNTPLRLPCSLTHSHVALV*CL*ISARRDVHCMRIIKS 485
G H P E K RN + PNTPL +LT H L + A+R++ + I+ S
Sbjct: 40 GFLLHLPLETK--RNPSNPNTPLSNLLNLTDFHYLLASNVCRKAKRELLAVLIVTS 93
>AE014298-4|AAF45486.2| 388|Drosophila melanogaster CG3038-PA,
isoform A protein.
Length = 388
Score = 29.5 bits (63), Expect = 4.5
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 652 GAFEHRPHEIKKFRNENKPNTPLRLPCSLTHSHVALV*CL*ISARRDVHCMRIIKS 485
G H P E K RN + PNTPL +LT H L + A+R++ + I+ S
Sbjct: 40 GFLLHLPLETK--RNPSNPNTPLSNLLNLTDFHYLLASNVCRKAKRELLAVLIVTS 93
>AE014298-3|AAN09009.1| 358|Drosophila melanogaster CG3038-PB,
isoform B protein.
Length = 358
Score = 29.5 bits (63), Expect = 4.5
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 652 GAFEHRPHEIKKFRNENKPNTPLRLPCSLTHSHVALV*CL*ISARRDVHCMRIIKS 485
G H P E K RN + PNTPL +LT H L + A+R++ + I+ S
Sbjct: 10 GFLLHLPLETK--RNPSNPNTPLSNLLNLTDFHYLLASNVCRKAKRELLAVLIVTS 63
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,935,476
Number of Sequences: 53049
Number of extensions: 512662
Number of successful extensions: 1112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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