Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0289
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit...    65   5e-11
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    32   0.44 
Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical ...    31   0.58 
Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U40802-6|AAV28320.1|  330|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
           (imitation swi) homologprotein 1 protein.
          Length = 1009

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 26/45 (57%), Positives = 37/45 (82%)
 Frame = +3

Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
           +  Y+ VFWER  ELQD ++++ QIE+GEA+IQR+ ++KKALDAK
Sbjct: 836 IQSYAKVFWERIEELQDSEKVLSQIEKGEARIQRKYAVKKALDAK 880



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +2

Query: 257 MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
           +A+Y+APF QLRISYGTNKGK Y EEEDR
Sbjct: 881 IAKYKAPFQQLRISYGTNKGKTYTEEEDR 909


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 496 IIKSLPISLSRGLTYDCEGDS*CFAFVNVYKYRVVLFYYCFSINC----LKLKY*PVFLF 329
           +IKS+ + LS  L Y C   S   +FV    Y    FYYC   N      K     V +F
Sbjct: 170 LIKSIVLQLSLYLDYCCHFFSIAISFVITLNY----FYYCTFRNWHSRNFKFHKFGVLIF 225

Query: 328 NIIFALVCSI 299
             +F+++C++
Sbjct: 226 TFLFSIICAM 235


>Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical
           protein W06G6.12 protein.
          Length = 256

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 507 WTSRRALIHKHYTSATCEC-VKLHGRRRGVLGLFSLRNFLI 626
           W S+R    +H+T   C C VK H     V   F  +N+LI
Sbjct: 126 WVSKRMSSQEHHTCPNCNCRVKAHVAFSLVTDAFEFKNYLI 166


>AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y70C5B.1 protein.
          Length = 170

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 507 WTSRRALIHKHYTSATCEC-VKLHGRRRGVLGLFSLRNFLI 626
           W S+R    +H+T   C C VK H     V   F  +N+LI
Sbjct: 40  WVSKRMSSQEHHTCPNCNCRVKAHVAFSLVTDAFEFKNYLI 80


>Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical
           protein ZK858.1 protein.
          Length = 841

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 663 PFIAGLLSTGRTKSRNSVTKINLTPPSAYHVV*HIHTLRLCSVC 532
           P    +++ GR   RN++T   +TPPSA+  +   H LR  + C
Sbjct: 758 PQSMAVVNVGRGSYRNALTTSPMTPPSAHTSMQKQHHLRKDNEC 801


>U40802-6|AAV28320.1|  330|Caenorhabditis elegans Hypothetical
           protein ZC477.3a protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +3

Query: 162 ELQDIDRIMGQIERGEAKIQ-------RRASIKKALDAKWRGTEHHSTNLESLMEQTRAK 320
           ++ D+D+++  I    A++        R A ++ ALDA      +  +++E L+EQT   
Sbjct: 237 KVSDLDKLLTTIREENARLSKEMRELSRLAQLEAALDADPTSVVYVGSDMERLLEQTEKN 296

Query: 321 IMLKRK 338
           I  K K
Sbjct: 297 IESKMK 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,052
Number of Sequences: 27780
Number of extensions: 263346
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)