Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0289
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ...    48   8e-06
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ...    45   4e-05
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ...    45   4e-05
At5g06160.1 68418.m00687 splicing factor-related contains some s...    30   1.7  
At2g46050.1 68415.m05728 pentatricopeptide (PPR) repeat-containi...    29   3.8  
At1g22610.1 68414.m02823 C2 domain-containing protein contains I...    27   8.8  

>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
            DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
            contains Pfam profiles PF00271: Helicase conserved
            C-terminal domain, PF00176: SNF2 family N-terminal
            domain, PF00249: Myb-like DNA-binding domain
          Length = 1055

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 24/45 (53%), Positives = 29/45 (64%)
 Frame = +3

Query: 123  VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
            V  Y+ VF ER  EL D DRI+  IERGEA+I R+  I KA+  K
Sbjct: 879  VERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKK 923



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +2

Query: 239  ESVGR*MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
            +++G+ + RYR P+ +L+I YG NKGK Y EE DR
Sbjct: 918  KAIGKKLDRYRNPWLELKIQYGQNKGKLYNEECDR 952


>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
            DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
            contains Pfam profiles PF00271: Helicase conserved
            C-terminal domain, PF00176: SNF2 family N-terminal
            domain, PF00249: Myb-like DNA-binding domain
          Length = 1072

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = +3

Query: 123  VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
            V  Y+ VF  R  EL D DRI+  IERGEA+I R+  I KA+  K
Sbjct: 885  VERYAQVFQVRYKELNDYDRIIKNIERGEARISRKDEIMKAIGKK 929



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +2

Query: 239  ESVGR*MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
            +++G+ + RYR P+ +L+I YG NKGK Y EE DR
Sbjct: 924  KAIGKKLDRYRNPWLELKIQYGQNKGKLYNEECDR 958


>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
            DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
            contains Pfam profiles PF00271: Helicase conserved
            C-terminal domain, PF00176: SNF2 family N-terminal
            domain, PF00249: Myb-like DNA-binding domain
          Length = 1069

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = +3

Query: 123  VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAK 257
            V  Y+ VF  R  EL D DRI+  IERGEA+I R+  I KA+  K
Sbjct: 885  VERYAQVFQVRYKELNDYDRIIKNIERGEARISRKDEIMKAIGKK 929



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +2

Query: 239  ESVGR*MARYRAPFHQLRISYGTNKGKNYVEEEDR 343
            +++G+ + RYR P+ +L+I YG NKGK Y EE DR
Sbjct: 924  KAIGKKLDRYRNPWLELKIQYGQNKGKLYNEECDR 958


>At5g06160.1 68418.m00687 splicing factor-related contains some
           similarity to splicing factor SP:Q12874 from [Homo
           sapiens]
          Length = 504

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +3

Query: 123 VMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAKWRGTEHHSTNLE 293
           ++EY   F++R   LQD+DRI+ ++   + + Q    I + LD +   ++H   +L+
Sbjct: 188 LLEYLVYFFQRTEPLQDLDRILSKV-CSDFEEQYADGIVEGLDNELIPSQHTVIDLD 243


>At2g46050.1 68415.m05728 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 590

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 328 NIIFALVC--SIRDSKLVEWCSVPRHLASNAFLIEA 227
           N+  AL+C  SIR+  LV W SV   LAS+ F  E+
Sbjct: 392 NLSEALLCFHSIREPDLVSWTSVIGALASHGFAEES 427


>At1g22610.1 68414.m02823 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1029

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 177 DRIMGQIERGEAKIQRRASIKKALDAKWRGTEHHSTNLESLMEQTRAKIMLK 332
           D I+G++      +  R  + K  D +W   + HS ++E   E+ + K   K
Sbjct: 534 DEILGRVFIPVRDVPVRQEVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSK 585


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,985,155
Number of Sequences: 28952
Number of extensions: 243894
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)