Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0288
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    39   6e-04
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    28   1.1  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   5.9  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +2

Query: 101 GNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
           G  +FFKGA +N+LRG  GA VL +YD+++ ++
Sbjct: 285 GARSFFKGAGANILRGVAGAGVLSIYDQVQLLM 317


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 558 NCSELHIKRSV*CLLSILNLSFVGIEIFHFFLHSGS 665
           NC+ +H+KR+    L  +N SF+  E  ++    GS
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNYIACQGS 343


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 169 EHEGTTSTSEDVGEGSLEEGEVPSVL 92
           +HE  +ST+  V +GSLE  E P+ L
Sbjct: 260 KHEALSSTANIVKDGSLERTEPPNSL 285


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 174  KTSTKAPPVPLRTLEKAPL 118
            K S+KAPPVPL + +  P+
Sbjct: 1016 KLSSKAPPVPLPSADAPPI 1034


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 17  HDDAVWSCQERYPV----QEHHPLLGYHCQDRGNLAFFKGAFSNVLR 145
           H + + S +  Y +    ++ +  +   C  +GNL  + GAF N ++
Sbjct: 278 HSETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLYTGAFDNAVK 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,671
Number of Sequences: 5004
Number of extensions: 47585
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)