Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0288
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019...    44   1e-04
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887     33   0.28 
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309     31   0.66 
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733     29   4.6  
10_08_0986 + 22050631-22051224,22051493-22051703,22051791-220520...    28   8.1  
09_04_0628 + 19093665-19094033,19094408-19094722                       28   8.1  

>05_06_0233 +
           26599068-26599466,26601214-26601829,26601871-26601917,
           26602101-26602268
          Length = 409

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +2

Query: 101 GNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
           G  +F++GA SN+ R TG A +LVLYDE+KK +
Sbjct: 304 GIKSFYRGALSNMFRSTGAAAILVLYDEVKKFM 336


>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
          Length = 380

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 101 GNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
           G  + FKGA +N+LR   GA VL  YD+++ V+
Sbjct: 338 GAKSLFKGAGANILRAVAGAGVLAGYDKLQVVV 370


>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
          Length = 382

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 92  QDRGNLAFFKGAFSNVLRGTGGAFVLVLYDEIK 190
           ++ G  + FKGA +N+LR   GA VL  YD+++
Sbjct: 337 KNEGAKSLFKGAGANILRAIAGAGVLSGYDQLQ 369


>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
          Length = 329

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 101 GNLAFFKGAFSNVLRGTGGAFVLVLYDEIKK 193
           G    F+G  +N+L G  GA VL  YD++ +
Sbjct: 281 GFFTLFRGVGANILSGMAGAGVLAGYDQLHR 311


>10_08_0986 +
           22050631-22051224,22051493-22051703,22051791-22052082,
           22052415-22052780,22052878-22052955,22053099-22053327
          Length = 589

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 351 NNKLWNHCITLYLTKNKLLKSFSCLIIHDLRGGL 250
           +NKLW   ++ Y   NKL+ S     I D+  GL
Sbjct: 413 DNKLWKKYVSTYKRINKLIGSLRYRNIMDMNAGL 446


>09_04_0628 + 19093665-19094033,19094408-19094722
          Length = 227

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 68 GVLVQDIALGTTRLHHHAP 12
          G  V+ +ALG   LHHHAP
Sbjct: 8  GGAVEGLALGIAPLHHHAP 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,287,933
Number of Sequences: 37544
Number of extensions: 297724
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)