Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0288
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)               29   3.6  

>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 101 GNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKV 196
           G ++  KGA +N+LRG  GA VL  +D+ K++
Sbjct: 264 GAMSLMKGAGANILRGMAGAGVLAGFDKFKEL 295


>SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 339 WNHCITLYLTKNKLLKSFSCLIIHDLRGGLRHG 241
           W  C  +  TK  ++    C I+H  +G + HG
Sbjct: 123 WTKCAIVCWTKCAIVHGTKCAIVHGTKGAIVHG 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,836,769
Number of Sequences: 59808
Number of extensions: 338587
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)