Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0288
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82059-6|CAB04874.1| 300|Caenorhabditis elegans Hypothetical pr... 52 3e-07
X76112-1|CAA53718.1| 300|Caenorhabditis elegans ADP/ATP translo... 50 1e-06
Z68218-2|CAA92472.1| 313|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U80931-5|AAB38001.1| 313|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF003141-4|AAK21485.1| 300|Caenorhabditis elegans Hypothetical ... 43 2e-04
U64842-4|AAB37086.2| 306|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z68882-2|CAA93110.1| 306|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z49207-2|CAA89069.1| 298|Caenorhabditis elegans Hypothetical pr... 35 0.063
Z81577-1|CAB04651.3| 289|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki... 29 4.2
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr... 29 4.2
>Z82059-6|CAB04874.1| 300|Caenorhabditis elegans Hypothetical
protein T27E9.1a protein.
Length = 300
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2
Query: 92 QDRGNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
Q+ G A FKGA SNV RGTGGA VL +YDEI+K L
Sbjct: 265 QNEGMSAMFKGALSNVFRGTGGALVLAIYDEIQKFL 300
Score = 35.9 bits (79), Expect = 0.027
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3
Query: 12 RRMMMQSGRAKSDILYKNTIHC 77
RRMMMQSGR DILYKNT+ C
Sbjct: 240 RRMMMQSGR--KDILYKNTLDC 259
>X76112-1|CAA53718.1| 300|Caenorhabditis elegans ADP/ATP
translocase protein.
Length = 300
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +2
Query: 95 DRGNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
+ G A FKGA SNV RGTGGA VL +YDEI+K L
Sbjct: 266 NEGMSAMFKGALSNVFRGTGGALVLAIYDEIQKFL 300
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 12 RRMMMQSGRAKSDILYK 62
RRMMMQSGR DILYK
Sbjct: 240 RRMMMQSGR--KDILYK 254
>Z68218-2|CAA92472.1| 313|Caenorhabditis elegans Hypothetical
protein K01H12.2 protein.
Length = 313
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +2
Query: 92 QDRGNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
++ G A FKGA SNV RGTGGA VL +YDEI+K +
Sbjct: 278 KNEGMSAMFKGALSNVFRGTGGALVLAIYDEIQKFI 313
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +3
Query: 12 RRMMMQSGRAKSDILYKNTIHCWATIAK 95
RRMMMQSGR D+LYKNT+ C I K
Sbjct: 253 RRMMMQSGR--KDVLYKNTLDCAVKIIK 278
>U80931-5|AAB38001.1| 313|Caenorhabditis elegans Hypothetical
protein T01B11.4 protein.
Length = 313
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +2
Query: 92 QDRGNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
++ G A FKGA SNV RGTGGA VL +YDEI+K +
Sbjct: 278 KNEGMSAMFKGALSNVFRGTGGALVLAIYDEIQKFI 313
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +3
Query: 12 RRMMMQSGRAKSDILYKNTIHCWATIAK 95
RRMMMQSGR D+LYKNT+ C I K
Sbjct: 253 RRMMMQSGR--KDVLYKNTLDCAVKIIK 278
>AF003141-4|AAK21485.1| 300|Caenorhabditis elegans Hypothetical
protein W02D3.6 protein.
Length = 300
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 92 QDRGNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
++ G A +KG SNV R TGGA VL +YDEI+ ++
Sbjct: 265 KNEGITALYKGGLSNVFRATGGALVLTIYDEIQHLI 300
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = +3
Query: 12 RRMMMQSGRAKSDILYKNTIHCWATIAK 95
RRMMMQSGR DILYKNT+ C I K
Sbjct: 240 RRMMMQSGR--KDILYKNTLDCVRKIVK 265
>U64842-4|AAB37086.2| 306|Caenorhabditis elegans Hypothetical
protein F25B4.7 protein.
Length = 306
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 101 GNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
G AFF GA N +RGTG A VL +Y+E++K +
Sbjct: 274 GPKAFFHGALVNAIRGTGAALVLAIYNELQKYM 306
>Z68882-2|CAA93110.1| 306|Caenorhabditis elegans Hypothetical
protein C47E12.2 protein.
Length = 306
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 95 DRGNLAFFKGAFSNVLRGTGGAFVLVLYDEIKK 193
+ G +KGA +N+ R GGA V+ LY+EI K
Sbjct: 272 EEGVRGLYKGALANIFRSAGGALVMALYEEIHK 304
>Z49207-2|CAA89069.1| 298|Caenorhabditis elegans Hypothetical
protein R07E3.4 protein.
Length = 298
Score = 34.7 bits (76), Expect = 0.063
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 113 FFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
F++GA +N LR TGGA ++ Y E K +
Sbjct: 270 FYRGALTNSLRSTGGALIITFYYEFSKYM 298
>Z81577-1|CAB04651.3| 289|Caenorhabditis elegans Hypothetical
protein R11.1 protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 92 QDRGNLAFFKGAFSNVLR-GTGGAFVLVLYDEI 187
++ G A +KG V+R G GGA +L++YDE+
Sbjct: 249 KEEGFGALYKGLLPKVMRLGPGGAVMLIVYDEV 281
>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
protein F46C3.1 protein.
Length = 1077
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3
Query: 458 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 336
FS KKRL + I S LE FTS R +N + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613
>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
protein F46C3.1 protein.
Length = 1077
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3
Query: 458 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 336
FS KKRL + I S LE FTS R +N + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613
>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
kinase protein.
Length = 1077
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3
Query: 458 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 336
FS KKRL + I S LE FTS R +N + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613
>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
translation initiationfactor 2 alpha kinase PEK protein.
Length = 1077
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3
Query: 458 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 336
FS KKRL + I S LE FTS R +N + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,023
Number of Sequences: 27780
Number of extensions: 272638
Number of successful extensions: 549
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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