Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0288
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    59   3e-11
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    59   3e-11
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 59.3 bits (137), Expect = 3e-11
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +2

Query: 101 GNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
           G  AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 268 GGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +3

Query: 12  RRMMMQSGRAKSDILYKNTIHCWATIAK 95
           RRMMMQSGRAKS+ILYK+T+HCWATI K
Sbjct: 238 RRMMMQSGRAKSEILYKSTLHCWATIYK 265


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 59.3 bits (137), Expect = 3e-11
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +2

Query: 101 GNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 199
           G  AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 268 GGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +3

Query: 12  RRMMMQSGRAKSDILYKNTIHCWATIAK 95
           RRMMMQSGRAKS+ILYK+T+HCWATI K
Sbjct: 238 RRMMMQSGRAKSEILYKSTLHCWATIYK 265


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 85  VAQQWMVFLYRISLLARPDCIIMRLP 8
           V +Q  ++   ++++ RPD  +M+LP
Sbjct: 133 VNEQMYLYALSVAVIHRPDTKLMKLP 158


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 85  VAQQWMVFLYRISLLARPDCIIMRLP 8
           V +Q  ++   ++++ RPD  +M+LP
Sbjct: 133 VNEQMYLYALSVAVIHRPDTKLMKLP 158


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 189 LISSYKTSTKAPPVPLRTLEKAPL 118
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,858
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)