Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0286
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.4  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.2  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   4.2  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   7.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.3  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 413 RPGDDSCAQRRAQRYTPGPSEGDYSPE 333
           RP   + A     + TP PS+G  SPE
Sbjct: 55  RPSTSAAADVDGWQVTPLPSDGTTSPE 81


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 383 AAGHKSRRLVDRSPDGVNKA 442
           AA  +S RL+  SP G N+A
Sbjct: 156 AAAQQSHRLMMTSPSGFNRA 175


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -1

Query: 464 WGRRCGNPPC 435
           W   CG PPC
Sbjct: 357 WSLYCGEPPC 366


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 551 PRPYDRRSTGSSLRATSRPSRDSGPQHP 468
           P P  RR     L    +P    GP+HP
Sbjct: 112 PLPSPRRVAVPVLVRDGKPCLSGGPKHP 139


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 426 SGERSTRRRLLCPAAGP 376
           SGER     L CP A P
Sbjct: 93  SGEREASVSLFCPKAKP 109



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 569 PIPSVTRIGRC 601
           PIPS   IGRC
Sbjct: 59  PIPSFACIGRC 69


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 317 PPQAPLPANNRLQMGR 364
           PPQ P P + R   GR
Sbjct: 273 PPQVPSPRSQRRYTGR 288


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 305 CRPEPPQ 325
           CRP+PPQ
Sbjct: 266 CRPDPPQ 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,969
Number of Sequences: 336
Number of extensions: 4230
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)