Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0286
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    28   1.1  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   2.6  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   4.5  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    26   4.5  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.9  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   7.8  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   7.8  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 112  RGATDASRLRPAPMSWPKC 56
            RGAT    +RP P+ WP C
Sbjct: 955  RGATSIVSVRPDPLFWPTC 973


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 229 AMPGRRGSRRPARTPPQYPS 170
           A  GR+ SRRP+ +PP  PS
Sbjct: 178 AFNGRKVSRRPSSSPPPIPS 197


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 26/84 (30%), Positives = 34/84 (40%)
 Frame = -2

Query: 337 RKRGLRRLWATTRCPRIKRELNELEAELRQRLAPFGAMPGRRGSRRPARTPPQYPSTGFV 158
           RKR L      T   RIK EL EL+ E       F A   +   +    T PQ P T   
Sbjct: 49  RKRTLASSHFQTPTKRIKYELGELQEEKTDLYPNFPAQL-KENKKPKLPTTPQTPKTP-K 106

Query: 157 ASSQIGLPRLVHSWTRGATDASRL 86
            + QI  P+ ++        A+RL
Sbjct: 107 RTIQIVTPKSLNRTCNPVPFATRL 130


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 39  SELPLQHFGQDIGAGLSREASVAPLVHEWTSRGRPI*E--LATKPVEGY*GGVLAGLLDP 212
           S  P  HF +D+G   ++EA    L+ E+  + RP  +  L   P EG+   V A    P
Sbjct: 432 SRYPEGHFVRDLGEMETKEAETEALLLEYDVQHRPFPKAVLDCLPEEGHNWKVPADKTHP 491

Query: 213 L 215
           L
Sbjct: 492 L 492


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 544 GRGRNPGEP-HSQCHQDREMWGTRSYSASIVTGQRSPLCTHTFQHIGLIS 690
           G   +  +P H Q   DR + G    + +    + + +C+H F H GL S
Sbjct: 163 GSSSSSSDPMHPQHWYDRVLEGLVGANENSENNREALICSHCFHHNGLAS 212


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 227 YAWQERIEEAREDPSSVSLHRLCRQLSNRPAP-TCPLVDE 111
           Y+W    + A E PS  +  ++  +++ +P P   PL D+
Sbjct: 27  YSWSSSTDSAGEIPSLPTNRKILEKIAEKPPPFESPLEDD 66


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 566 SPGLRPRPYDRRSTGSSLRATSRP 495
           SPG  P  Y++  TG     TSRP
Sbjct: 472 SPGFPPSAYNQNRTGYGFPDTSRP 495


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 493 PVIQDPNTPDGVDDAATRLVDS 428
           P+I  P+ PD  DD +  LVD+
Sbjct: 37  PIISIPSNPDSNDDVSLVLVDT 58


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 557 LRPRPYDRRSTGSSLRATSRPSRDSGPQHP 468
           LRPR  D +   SSL  T+ P+  + P  P
Sbjct: 209 LRPRNLDAQWRPSSLSQTNSPTHAANPSFP 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,339
Number of Sequences: 5004
Number of extensions: 63331
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)