Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0286
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0609 + 5443780-5443875,5444540-5445136,5448792-5448881,544... 39 0.004
12_02_0227 - 15894357-15894494,15894587-15894655,15894837-158949... 32 0.38
01_06_1781 + 39832977-39833284,39835083-39835261,39836085-398361... 31 0.87
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 30 1.5
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 30 1.5
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 30 1.5
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 30 2.0
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 30 2.0
08_01_0182 - 1534448-1534557,1534925-1535987 29 2.7
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 29 2.7
06_01_0451 + 3194919-3195416,3195560-3195580,3196282-3196467,319... 29 2.7
01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48... 29 2.7
05_05_0356 - 24373879-24374469 29 3.5
02_03_0295 - 17383064-17383087,17383314-17383463,17383922-173840... 29 3.5
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 29 4.7
11_04_0435 + 17710853-17711003,17711312-17711547,17712417-17712752 28 6.2
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 28 8.1
10_07_0126 - 13143485-13144117,13144204-13145238 28 8.1
09_04_0279 - 16349156-16349788,16352409-16353344 28 8.1
08_02_0897 - 22362136-22363698 28 8.1
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 28 8.1
06_02_0006 + 10528423-10528768,10529132-10529201,10530820-105308... 28 8.1
>05_01_0609 +
5443780-5443875,5444540-5445136,5448792-5448881,
5449615-5450121
Length = 429
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = -2
Query: 220 GRRGSRRPARTPPQYPSTGFVASSQIG--LPRLVHSWTRGATDASRLRPAPMSWPKC-WS 50
G RRPAR + A + LP +W GA A P+P +WP WS
Sbjct: 73 GTGWGRRPARGEEDAAARDVAAGDVVARLLPSAPSTWPAGAPSAGAPTPSPATWPSVKWS 132
Query: 49 GSSLLMTLHPQRPPRA 2
LL H + P A
Sbjct: 133 SDCLLELQHRRLPSTA 148
>12_02_0227 -
15894357-15894494,15894587-15894655,15894837-15894902,
15895130-15895219,15895312-15895408,15896449-15896771
Length = 260
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -2
Query: 259 ELRQRLAPFGAMPGRRGSRRPARTP-PQYPSTGFVASSQIGLPRLVHSWTRGATDASRLR 83
+LR LA GR RR P P PS+ +S+ R + ++ RG++ +SR
Sbjct: 7 QLRLHLAAAAGAAGRGARRRNPLPPVPTVPSSSSSSSASTTTTRDLAAFARGSSSSSRSL 66
Query: 82 PAPMSWPKCWS 50
+CWS
Sbjct: 67 SDRAGGGECWS 77
>01_06_1781 +
39832977-39833284,39835083-39835261,39836085-39836170,
39836205-39836293,39837477-39837579,39837940-39837968,
39838668-39838830,39838901-39838954,39839443-39839621,
39839869-39840001
Length = 440
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 554 ATRVSPIPSVTRIGRCGVPGRTVPRSLRGNVAPCAHTRS 670
A R + IPS +CGVPG + LRG++ CA TR+
Sbjct: 83 ADRATQIPS-----KCGVPGASSSCKLRGSLERCAITRN 116
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 612 PGTPHLPILVTLGMGLTRVATSPLRPKVDWELF 514
P T + T+ T TSP+ P+ DWELF
Sbjct: 287 PSTSSSTVTTTMAAATTTTTTSPI-PRFDWELF 318
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 278 LALYPGTTSCRPEPPQAPLPANNRLQMGREYTSGPAAGHKSRR 406
LA Y G + +P P QAP PA+ R+ ++ P +G+K ++
Sbjct: 137 LAAYGGAAASQPAPRQAP-PASGRVLPHKKRGRPPGSGNKQQQ 178
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = -2
Query: 232 GAMPGRRGSRRPARTPPQYPSTGFVASSQIG----LPRLVHSWTRGATDASRLRPAPMSW 65
GA P RRG RPAR G V ++ G R WTRG T A A S
Sbjct: 93 GARPWRRGEDRPARGGQHAADDGEVQGTRRGGDLKQRREGRRWTRGETQARESGKAGNS- 151
Query: 64 PKCWSGSS 41
+C S S
Sbjct: 152 GRCQSNGS 159
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 302 SCRPEPPQAPLPANNRLQMGREYTSGPAAGHKSRRLVDRSPDGVNKAG 445
+ +P PP P P NR+ + + + K+R L+ +PD AG
Sbjct: 462 NAQPAPPLLPHPNGNRIDVNKRSDIRESFNEKNRILMKSAPDHRGPAG 509
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 2 GTRRPLRVQSH*ERTAAPAFRP-GHRRGPEPRSIGCPSRPRVDKSGQ 139
G + PLR H R P RP GH P PR + P +GQ
Sbjct: 112 GMQMPLRTAVHDNRAGHPMARPAGHATAPPPRQHATVNGPMRMPNGQ 158
>08_01_0182 - 1534448-1534557,1534925-1535987
Length = 390
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 448 PHRRPHQGCWGP-ESREGRLVAL-KELPVDLRS*GRGRNPGEPHSQCHQDREMWGTRSYS 621
P RRP CW P + G V + K V LR G P + C ++W R+
Sbjct: 282 PRRRP---CWLPAKDLGGHAVFIGKNNAVALRGDDGGGATPAPRANCVYWTDVWTDRAKV 338
Query: 622 ASIVTGQRSPLC 657
+VTG+ S LC
Sbjct: 339 FDVVTGE-STLC 349
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 308 RPEPPQAPLPANNRLQMGREYTSGPAAGHKSRR 406
+P+PP AP PA T PA+G K +R
Sbjct: 23 KPKPPPAPSPAAAPAPAAENGTHDPASGQKRKR 55
>06_01_0451 +
3194919-3195416,3195560-3195580,3196282-3196467,
3197272-3197556
Length = 329
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = -1
Query: 542 YDRRSTGSSLRATS-RPSRDSGPQHP*WGRRCGNPPC*LHQGSDRPGDDSCAQRRAQRYT 366
+D SS++AT S + P HP +GR + G+ R G R
Sbjct: 45 HDGGYKSSSMQATPVYNSPNESPSHPSYGRHSRSSSVSRFSGTLRDGSRKAGGERKALND 104
Query: 365 PGPSEGDYSPEEG-LEEALGDNSLSQ 291
G E + EEG E+ GD LS+
Sbjct: 105 KGWPECNVIEEEGPYEDLAGDTGLSR 130
>01_01_0061 +
483116-483757,483891-484046,484171-484262,484410-485076
Length = 518
Score = 29.5 bits (63), Expect = 2.7
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Frame = -2
Query: 466 DGVDDAATRLVDSIRGAIDQATTLVPSG-GPRGILPAHLKAIIRRKRGLRRLWATTRCPR 290
DG+ A + V R A+ Q T +VP+ + +LP H K ++ ++AT P+
Sbjct: 14 DGMKAGAAKPVGEHRTALLQVTDIVPADLDDKDLLPRHGKFYVKVSDSSHSIYATLPLPQ 73
Query: 289 IKREL-NELEAEL---RQRLAPFGAMPGRRGSR-RPARTP 185
L N+L+ RL P +P G+R P R P
Sbjct: 74 ADLVLSNKLQLGQFVHLDRLDPGSPVPVIVGARPLPGRHP 113
>05_05_0356 - 24373879-24374469
Length = 196
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +2
Query: 332 LPANNRLQMGREYTSGPAAGHKSRRLVDRSPDGVNKAGCRIVDPIRGVG---VLNHGKVD 502
+PA + RE PAA H+ RR V R G G + P+ V + H ++
Sbjct: 32 VPAAGAAALRREEGEAPAAVHRGRRGVPRIGRGGGVGGGGVTVPVEHVARRRLQEHEHLN 91
Query: 503 *SLLKSSQSTFGRRG 547
+L S G RG
Sbjct: 92 EEMLPSFSGGGGSRG 106
>02_03_0295 -
17383064-17383087,17383314-17383463,17383922-17384038,
17385506-17385592,17386269-17386408,17387708-17387839,
17387927-17387936,17388949-17388999,17389038-17389083,
17389570-17389690,17389775-17389913
Length = 338
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 290 PGTTSCRPEPPQAPLPANNRLQMGREYTSGPAAGHKSRRLVDRSPDGVNKAGCRIVDPIR 469
P S R PP +P+P + R +M E S G R V RS DG V+ +R
Sbjct: 10 PARGSRRRPPPSSPVPLSPRQEMLLEAASDGDLGFLKR--VVRSLDGGRGRPAEAVEAVR 67
Query: 470 --GVGVLN 487
G G L+
Sbjct: 68 ECGAGALH 75
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 448 PHRRPHQGCWGPESREGRLVALKEL 522
PHR+P + CW PE L AL++L
Sbjct: 232 PHRKPRR-CWAPELHRRFLQALQQL 255
>11_04_0435 + 17710853-17711003,17711312-17711547,17712417-17712752
Length = 240
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Frame = -2
Query: 598 SPYPG---DTGNGAHPGCDLAPTT-----EGRLGAL*ERLVDLPVIQDPNTPDG 461
SPYP TG+G+ P C+ A TT +G L L P+++ PDG
Sbjct: 103 SPYPAMKHATGDGSKPPCNCAETTIAKRNDGLSAVLRNVLAVTPLVETVVEPDG 156
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -2
Query: 325 LRRLWATTRCPRIKRELNELEAELRQRLAPFGAMPGRRGSRRPARTPPQYPSTGFVASSQ 146
LRR++ T + P + + E PF A+ G +GS +P P+TG +++
Sbjct: 258 LRRMYETVQEPFLNA--TTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTG 315
Query: 145 IGLPR---LVHSWTRGATDA 95
P L + W+ A A
Sbjct: 316 TPAPNTNPLPNPWSSNAGGA 335
>10_07_0126 - 13143485-13144117,13144204-13145238
Length = 555
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 132 DLSTRGREGQPMLLGSGPRRCPGRNAGAA 46
D+ RG + + G+G R CPG+N G A
Sbjct: 475 DVDVRGGDLRLAPFGAGRRVCPGKNLGLA 503
>09_04_0279 - 16349156-16349788,16352409-16353344
Length = 522
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 129 LSTRGREGQPMLLGSGPRRCPGRNAGAAV 43
+ +G++ + + GSG R CPG N G V
Sbjct: 437 IDVKGQDFELLPFGSGRRMCPGYNLGLKV 465
>08_02_0897 - 22362136-22363698
Length = 520
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 129 LSTRGREGQPMLLGSGPRRCPGRNAGAAV 43
+ +G++ + + GSG R CPG N G V
Sbjct: 436 IDVKGQDFELLPFGSGRRMCPGYNLGLKV 464
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 245 SLSQLRFQFIKLALYPGTTSCRPEPPQAPLPANNRLQMGREYTSGPA 385
S S R+ F L Y TTS P PP + ++ Y + PA
Sbjct: 30 SPSATRYDFDPLLSYLSTTSSSPSPPPTSVLPVTESRLAASYAAVPA 76
>06_02_0006 +
10528423-10528768,10529132-10529201,10530820-10530892,
10530973-10531053,10532124-10532239,10532339-10532630
Length = 325
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 311 PEPPQAPLPANNRLQMGREYTSGPAAGHKSRRLVD 415
P PP +P P NN+ PA H +R + D
Sbjct: 268 PTPPISPSPVNNKSNSISPTPLSPAPDHNNRAVAD 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,981,358
Number of Sequences: 37544
Number of extensions: 597690
Number of successful extensions: 2544
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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