Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0286
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_53695| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 30   1.6  
SB_30717| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.56)           30   2.1  
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            29   2.7  
SB_57599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               29   4.8  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  29   4.8  
SB_38643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_30866| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_35222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = -2

Query: 244  LAPFGAMPGRRGSRRPARTPPQYPSTGFVASSQIGLPRLVHSWTRGATDASRLRPAPMSW 65
            LAP G     +  +RP +  P Y S G + S+      +VH W R     + +  AP  W
Sbjct: 2921 LAPNGEEKTPKSKKRP-KGAPFYASDGPMHSTP-----MVHQWVRANPQCATISEAPPPW 2974

Query: 64   PKCWSGSSLLMTL 26
                 GS L +T+
Sbjct: 2975 ATMSEGSPLWVTM 2987


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -1

Query: 566  SPGLRPRPYDRRSTGSSLRATSRPSRDSGPQHP*WGRRCGNPPC*LHQGSDRPGDDSCAQ 387
            SP  R  P DRR +  S R+ S P R+   + P       +PP    +   R    S  +
Sbjct: 1072 SPSPRRTPEDRRRSRGSRRSPSPPKREPRRRSP-----SASPP--RREARKRSLSRSPKR 1124

Query: 386  RRAQRYTPGPSEGDYSP---EEGLEEA 315
               +R +P PSEG   P   E G EEA
Sbjct: 1125 EVRRRGSPSPSEGRKKPVDVEMGEEEA 1151


>SB_53695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = -1

Query: 233 RGYAWQERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAEML 54
           RG   Q    +  ED   ++       L+  P  + PLV +  N+ F ++     L E +
Sbjct: 134 RGQPDQNTDSDDDEDLRELTKEYESEDLTGSPLKSEPLV-KLFNKMFRSKVEEKALKEKM 192

Query: 53  ERQFAPNDSAPSEAASC 3
           ERQ  P + A ++ A C
Sbjct: 193 ERQVRPENCANAKVARC 209


>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -1

Query: 578 WEWGSPGLRPRPYDRRSTGSSLRATSRPSRDSGPQH 471
           W W S GL PRP   R T  S  A  R  +   P H
Sbjct: 555 WRWWSSGLAPRPPRFRETLMSCPAEPRDEKPHRPGH 590


>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
 Frame = -2

Query: 424 RGAIDQATTLVPSGGPRGILPAHLKAIIRRK----RGLR--RLWATTRCPRIKRELNELE 263
           R  +D ++  +P GGPR  +  H++  IRR     +G++  R+    R   ++R+  ELE
Sbjct: 217 RSTVDASSRDLPEGGPRTNVATHMQENIRRTDEELQGVKRERVELEGRLSSLQRKNEELE 276

Query: 262 AEL 254
            EL
Sbjct: 277 DEL 279


>SB_30717| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.56)
          Length = 499

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -2

Query: 310 ATTRCPRIKRELNELEAELRQRL--APFGAMPGRRGSRRPARTPPQYPSTGFVASSQIGL 137
           A+   PR +R L E   +  Q +   P G  PG    R P R PP   ++G      +G 
Sbjct: 372 ASEPTPRQRRRL-ESSGQFPQTMPRTPMGGYPGGYPFRPPMRIPPPLLTSG--TRGSVGS 428

Query: 136 PRLVHSWTRGATDASRLRPAPMSWPKCWS 50
            R    ++  AT + R R   ++   C S
Sbjct: 429 LREAAVFSAAATSSRRTRTQTLTARACSS 457


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
 Frame = +1

Query: 376 WARRWAQESSPGRSLP*WSQ-QGGLPHRRPHQGCWGPESREGRLVALKELPVDLRS*GRG 552
           WARR  +  +  R  P   + +  +  R P     GP    G     +  P   R    G
Sbjct: 651 WARRDERYPAQERRAPAQDRREPAVDKRGPAIDRRGPAQDRGEPAQDRRQPAHDRREAYG 710

Query: 553 RNPGEPHSQCHQDREMWGTRSYSASI-VTGQRSPLCTHTFQHIG 681
           R+  E +    + RE +GTR    S   +G+R  L    FQ  G
Sbjct: 711 RSRTEDYGASREKRESYGTRERKDSRGSSGERRELYIKPFQASG 754


>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 250 QRLAPFGAMPGRRGSRRPARTPPQYPSTGFVASSQIGLP 134
           +R  P  A+P   G +R   TPP Y     +  ++  LP
Sbjct: 466 KRTLPTAALPTAMGRKREVETPPNYKKVILIEKTEENLP 504


>SB_57599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 53  PAFRP-GHRRGPEPRSIGCPSRPRVDKSGQA 142
           PA RP G+RR PEPR  G   R R  K+ +A
Sbjct: 464 PAIRPQGYRREPEPRQGGGQIRKRETKTLKA 494


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = -1

Query: 566 SPGLRPRPYDRRSTGSSLRATSRPSRDSGPQHP*WGRRCGNPPC*LHQGSDRPGDDSCAQ 387
           S G + +P  + S G + +  + P  +S       G+  G+ P     GS+R  +    Q
Sbjct: 182 SVGKQSKPQQQESEGENTKEGNSPQENSKTSGQ--GQSAGSVPSLTSTGSERKPEQQENQ 239

Query: 386 RRAQRYTPGPSEGD 345
           + + +    P+EGD
Sbjct: 240 QESGKSGKQPTEGD 253


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = -1

Query: 566 SPGLRPRPYDRRSTGSSLRATSRPSRDSGPQHP*WGRRCGNPPC*LHQGSDRPGDDSCAQ 387
           S G + +P  + S G + +  + P  +S       G+  G+ P     GS+R  +    Q
Sbjct: 460 SVGKQSKPQQQESEGENTKEGNSPQENSKTSGQ--GQSAGSVPSLTSTGSERKPEQQENQ 517

Query: 386 RRAQRYTPGPSEGD 345
           + + +    P+EGD
Sbjct: 518 QESGKSGKQPTEGD 531


>SB_38643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 302 SCRPEPPQAPLPANNRLQMGREYTSGPAAGHKSRRLVDRSPDGVNKAGCRIVDPIRGVGV 481
           +C P  P  P P+++ L+  RE         K    +  +  G N    R+  P+ G+  
Sbjct: 6   ACAPPKPSVPKPSSDILRAIREGGKPRPRQPKINPSLALNKGGENTPSGRVHYPVHGIDY 65

Query: 482 LNHGKVD---*SLLKSSQSTFGRRG 547
           +   + D    SL  +S+S+FG  G
Sbjct: 66  MRPIRRDSNASSLSSNSRSSFGGGG 90


>SB_30866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 26/64 (40%), Positives = 32/64 (50%)
 Frame = -1

Query: 569 GSPGLRPRPYDRRSTGSSLRATSRPSRDSGPQHP*WGRRCGNPPC*LHQGSDRPGDDSCA 390
           GSPG R RPYDR+  G  +R   RP RD         R   +PP   H  +DR  D + A
Sbjct: 8   GSPG-RMRPYDRQRRGCIVR-NHRP-RDRQQSR----RTARSPP---HSTTDRE-DGTLA 56

Query: 389 QRRA 378
           +R A
Sbjct: 57  ERHA 60


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 578 WEWGSPGLRPRPYDRRSTGSSLRATSRPSR 489
           WEW     RP P  +    SS+R TS PSR
Sbjct: 640 WEWTQ---RPTPSRQLRRSSSIRETSSPSR 666


>SB_35222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 563 PGLRPRPYDRRSTGSSLRATSRPSRDSGP 477
           P LR   +D R TG  LR      RD+GP
Sbjct: 221 PDLRINGHDLRDTGPDLRINGPDLRDTGP 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,770,131
Number of Sequences: 59808
Number of extensions: 613346
Number of successful extensions: 2276
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)