Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0286
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein...    31   1.0  
Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.      29   3.2  
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40941-6|AAA81711.2|  435|Caenorhabditis elegans Jnk kinase prot...    29   4.2  
AB024086-1|BAA82641.1|  435|Caenorhabditis elegans JKK-1 protein.      29   4.2  
Z78418-5|CAB01694.2|  361|Caenorhabditis elegans Hypothetical pr...    28   5.5  
X64435-1|CAA45773.1|  318|Caenorhabditis elegans collagen protein.     28   7.3  
U41624-3|AAF99944.1|  318|Caenorhabditis elegans Dumpy : shorter...    28   7.3  
U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein 2
           protein.
          Length = 298

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 604 PTSPYPGDTGNGAHPGCDLAPTTEGRLGAL*E-RLVDLPVIQDPNTPDG 461
           P  P PGD GNG   G      T+G+ G+L E  +V+ P I  P  P G
Sbjct: 114 PPGP-PGDDGNGGQDGVRGNDGTDGKEGSLLESAIVNEPCIICPPGPPG 161


>Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical
           protein F49B2.3 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 548 RPYDRRSTGSSLRATSRPS-RDSGPQHP*WGRRCGNPPC*LHQGSDRPGDDSCAQRRAQR 372
           +P +  + G    ATSR S RDSG + P    R G  P     G D+  + SC     QR
Sbjct: 129 KPQESFTAGPFSLATSRTSTRDSGNRPPPPRERSGTQPVRQAAGYDQGHELSCVSGSLQR 188

Query: 371 YTP 363
             P
Sbjct: 189 LWP 191


>Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical
           protein R13.4 protein.
          Length = 803

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 290 PGTTSCRPEPPQAPLPANNRLQMGREYTSGPA--AGH 394
           PG     P+ P    P N  ++M  +Y SGP+  AGH
Sbjct: 244 PGMMPDYPQMPMGQTPGNTMMRMPVQYPSGPSQMAGH 280


>Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical
           protein T03F6.5 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -2

Query: 325 LRRLWATTRCPRIKRELNELEAELRQRLAPFGAMPGRRGSRRPARTPPQYPSTGFVASSQ 146
           L + W T    R++R++N+LE++L++           R  R+ A   P+ P T  +   +
Sbjct: 49  LEKKWTTVL--RLQRKVNDLESKLQESQREINHGAPTRDKRQAADWIPRPPETQKLTGHR 106

Query: 145 IGLPRLVHS--WT 113
           + + R++    WT
Sbjct: 107 LPITRVIFHPLWT 119


>AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical
           protein Y11D7A.11 protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/89 (31%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
 Frame = -2

Query: 619 CTTWYPTSP-YPGDTGNGAHPGCDLAPTTEGRLGAL*ERLVDLPVIQDPNTPDGVDDAAT 443
           C    P  P  PG  GN   PG D  P   GR G   E+    P  +D       DD   
Sbjct: 169 CPAGPPGPPGNPGPQGNSGRPGMDGMPGRNGRCGRPGEQGERGPNGEDGRPGRRGDDGMP 228

Query: 442 RLVDSIRG-----AIDQATTLVPSGGPRG 371
             V+ I G      +  A     S GPRG
Sbjct: 229 GTVNEIPGQAGPPGLRGAPGATGSQGPRG 257


>AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -2

Query: 325 LRRLWATTRCPRIKRELNELEAELRQRLAPFGAMPGRRGSRRPARTPPQYPSTGFVASSQ 146
           L + W T    R++R++N+LE++L++           R  R+ A   P+ P T  +   +
Sbjct: 49  LEKKWTTVL--RLQRKVNDLESKLQESQREINHGAPTRDKRQAADWIPRPPETQKLTGHR 106

Query: 145 IGLPRLVHS--WT 113
           + + R++    WT
Sbjct: 107 LPITRVIFHPLWT 119


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/65 (27%), Positives = 24/65 (36%)
 Frame = -1

Query: 545 PYDRRSTGSSLRATSRPSRDSGPQHP*WGRRCGNPPC*LHQGSDRPGDDSCAQRRAQRYT 366
           P+ RR       ATS   R  G +HP   R   +      +  DR  D  C   R + + 
Sbjct: 627 PFQRRMNSPQTHATSYARRSDGKRHPSKSRSSRDDRA-NRRDRDRDSDGRCGDDRRRDHR 685

Query: 365 PGPSE 351
             P E
Sbjct: 686 SHPYE 690


>U40941-6|AAA81711.2|  435|Caenorhabditis elegans Jnk kinase protein
           1 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 626 EALYDLVPHISLSW*HWEWGSPGLRPRPYDRRSTGSSLRATSRPSRDSGPQH 471
           + L DL   +   W   + G   +R RP DRRST    +     S  S PQH
Sbjct: 8   QRLRDLETRVR-KWKFLKLGLTEVRLRPRDRRSTSVDQKHKECSSTSSSPQH 58


>AB024086-1|BAA82641.1|  435|Caenorhabditis elegans JKK-1 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 626 EALYDLVPHISLSW*HWEWGSPGLRPRPYDRRSTGSSLRATSRPSRDSGPQH 471
           + L DL   +   W   + G   +R RP DRRST    +     S  S PQH
Sbjct: 8   QRLRDLETRVR-KWKFLKLGLTEVRLRPRDRRSTSVDQKHKECSSTSSSPQH 58


>Z78418-5|CAB01694.2|  361|Caenorhabditis elegans Hypothetical
           protein F25D7.2 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 595 PYPGDTGNGAHPGCDLAPTTEGRLGAL*ERLVDLPVIQ 482
           P+  +  NG + G + APTTEG   A  +  V+ P  Q
Sbjct: 291 PHVNNNNNGENDGDNTAPTTEGETPATSDAPVEPPAPQ 328


>X64435-1|CAA45773.1|  318|Caenorhabditis elegans collagen protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 589 PGDTGNGAHPGCDLAPTTEGRLG 521
           PG TG   HPG    P   GR+G
Sbjct: 161 PGQTGESGHPGLPGRPGKPGRVG 183


>U41624-3|AAF99944.1|  318|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 7 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 589 PGDTGNGAHPGCDLAPTTEGRLG 521
           PG TG   HPG    P   GR+G
Sbjct: 161 PGQTGESGHPGLPGRPGKPGRVG 183


>U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical
           protein C06A8.5 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = -2

Query: 583 DTGNGAHPGCDLAPTTEGRLGAL*ERLVDLPVIQDPNTPDGVDDAATRLVDSIRGAIDQA 404
           D  N   P C    + E R   L E+L DL V  D      +D  A  L+DS+R  ID+ 
Sbjct: 34  DLKNQGKP-CSSKLSLEERAQELSEQLRDLHVEMDGKNATILDRDA--LIDSLRSEIDKL 90

Query: 403 TTLVPSGGPRGILPAH 356
             +        ++P H
Sbjct: 91  EKINKEFANGSVIPEH 106


>AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical
           protein Y50D4A.3 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 183 GGVLAGLLDPLLPGIAPKGANLC 251
           GG ++  LDP  PG  P   N C
Sbjct: 129 GGPISSFLDPKTPGYTPSDGNSC 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,800
Number of Sequences: 27780
Number of extensions: 413993
Number of successful extensions: 1520
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)