Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0286
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.6  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    23   3.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.4  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 401 RRLVDRSPDGVNKAGCRIVDPIRG 472
           R + D    G+ K GC I++P  G
Sbjct: 84  RMIQDAEDKGLLKPGCTIIEPTSG 107


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 555 QPG*APFPVSPG*G 596
           QPG  PFP  PG G
Sbjct: 28  QPGRRPFPTFPGQG 41


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -2

Query: 673 AGTCVCTRGYVAP*RSRHCTTWYPTSPYPGDTGNGAHPGC 554
           +G C C  GY A    + CT   P   +  + G+ +   C
Sbjct: 244 SGGCHCKPGYQADVEKQECTE-CPIGKFKHEAGSHSCEAC 282


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 555 QPG*APFPVSPG*G 596
           QPG  PFP  PG G
Sbjct: 14  QPGRRPFPTFPGQG 27


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 404 DDSCAQRRAQRYTPGPSEGDYSPEE 330
           D S ++R ++  +P P+E  + PEE
Sbjct: 647 DASSSRRGSKIGSPTPAESTFIPEE 671


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 426 SGERSTRRRLLCPAAGP 376
           SGER     L CP A P
Sbjct: 81  SGEREASVSLFCPRAKP 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,759
Number of Sequences: 438
Number of extensions: 5140
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)