Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0286
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07240.1 68415.m00831 Ulp1 protease family protein contains P...    29   2.2  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    29   3.9  
At1g47660.1 68414.m05295 hypothetical protein                          29   3.9  
At5g63100.1 68418.m07922 expressed protein                             28   6.8  
At5g09970.1 68418.m01152 cytochrome P450 family protein                28   6.8  
At4g34310.2 68417.m04876 expressed protein                             28   6.8  
At4g34310.1 68417.m04877 expressed protein                             28   6.8  

>At2g07240.1 68415.m00831 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 928

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 356 SEGDYSPEEGLEEALGDNSLSQDK 285
           ++GD+ P    E ALGDN L  DK
Sbjct: 316 ADGDHGPHTDKEVALGDNGLQADK 339


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
            protein [Arabidopsis thaliana] GI:21743571; contains Pfam
            profile PF00730: HhH-GPD superfamily base excision DNA
            repair protein
          Length = 1729

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 693  RAYQPDVLERVCAQGATLPRNDRGTVRPGTPH-LPILVTLGMGLT 562
            R    +V  R   QG ++PR   G + P TPH LP     GMGL+
Sbjct: 1033 RVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHELP-----GMGLS 1072


>At1g47660.1 68414.m05295 hypothetical protein
          Length = 275

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -2

Query: 295 PRIKRELNELEAELRQR-LAPFGAMPGRRGSRRPART---PPQYPSTGFVASSQIGLPRL 128
           P    E+ E   E   R +AP  A P R  +  PAR    PP +P+T   A + + +P  
Sbjct: 6   PESHDEMTETSNEQGVRTIAPRAAPPARPTTPPPARPTTPPPVWPTTPPPAGAPVAVPAA 65

Query: 127 VH 122
            H
Sbjct: 66  AH 67


>At5g63100.1 68418.m07922 expressed protein 
          Length = 329

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 266 QFIKLALYPGTTSCRPEPPQAPL 334
           QF+ L+  P T + RP+PPQ P+
Sbjct: 20  QFLNLSSPPLTLNLRPKPPQNPI 42


>At5g09970.1 68418.m01152 cytochrome P450 family protein 
          Length = 536

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 132 DLSTRGREGQPMLLGSGPRRCPGRNAGAA 46
           D+  RG + +    G+G R CPG+N G A
Sbjct: 461 DMDIRGGDLRLAPFGAGRRVCPGKNMGLA 489


>At4g34310.2 68417.m04876 expressed protein 
          Length = 1035

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 556 NPGEPHSQCHQDREMWGTRSYSAS 627
           NPG PH +CH+     G ++ S+S
Sbjct: 891 NPGLPHWKCHEKERQSGKKNESSS 914


>At4g34310.1 68417.m04877 expressed protein 
          Length = 1228

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 556 NPGEPHSQCHQDREMWGTRSYSAS 627
           NPG PH +CH+     G ++ S+S
Sbjct: 891 NPGLPHWKCHEKERQSGKKNESSS 914


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,698,917
Number of Sequences: 28952
Number of extensions: 393908
Number of successful extensions: 1391
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)