Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0284
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3LW68 Cluster: Putative uncharacterized protein; n=1; ...    37   0.41 
UniRef50_A0CQT4 Cluster: Chromosome undetermined scaffold_24, wh...    36   0.71 
UniRef50_Q8D221 Cluster: YfiO protein; n=1; Wigglesworthia gloss...    33   8.8  

>UniRef50_Q3LW68 Cluster: Putative uncharacterized protein; n=1;
            Bigelowiella natans|Rep: Putative uncharacterized protein
            - Bigelowiella natans (Pedinomonas minutissima)
            (Chlorarachnion sp.(strain CCMP 621))
          Length = 1278

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = +2

Query: 335  IKCFVLAIL-NQKTG*KDQNFMFKNKFTNSL*YIFLN*VLRNNSRSGYWEYDFLASSINN 511
            +KCF   +L N     K +N+ FKN  +N   +   +  + N     Y EY F+    N 
Sbjct: 1052 LKCFHEKLLYNLINYQKFKNYKFKNMNSNFNTFFQYSLKVLNKCFLVYIEYLFVKD--NT 1109

Query: 512  FYHRNFLINVVESQWIVIIFRKTAMDCDNI*ENRLRIVFY 631
            F+  NF IN      I I  R + ++  N   NRL + FY
Sbjct: 1110 FFRTNFKINSASMINISISLRNSIVEAQNYLSNRLILGFY 1149


>UniRef50_A0CQT4 Cluster: Chromosome undetermined scaffold_24, whole
            genome shotgun sequence; n=6; Eukaryota|Rep: Chromosome
            undetermined scaffold_24, whole genome shotgun sequence -
            Paramecium tetraurelia
          Length = 5314

 Score = 36.3 bits (80), Expect = 0.71
 Identities = 21/75 (28%), Positives = 42/75 (56%)
 Frame = -2

Query: 465  LELFLSTQFKNIYHREFVNLFLNIKFWSFYPVFWLSIARTKHLI*S*LINNKYVMQMNS* 286
            L+ F+S +  ++++ + +N+FL I+FW  Y +F+++I  T   +   +I    + + N  
Sbjct: 4903 LDSFISNKLDSVFNADSLNIFLQIQFWK-YAIFYIAIGFTGAYVALMVIG---LRKDNQD 4958

Query: 285  FIYLVTKYSIINMKL 241
            FI  +TK   +N  L
Sbjct: 4959 FIEEITKELNVNTNL 4973


>UniRef50_Q8D221 Cluster: YfiO protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           YfiO protein - Wigglesworthia glossinidia brevipalpis
          Length = 226

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +2

Query: 392 FMFKNKFTNSL*YIFLN*VLRNNSRSGYWEY---DFLASSINNFYHRNFLINVVESQWIV 562
           F++K KF  +  Y +L     NN +   ++Y   DF  SS N  +H N  I   E Q I 
Sbjct: 133 FIYKKKFIENTKYAYL---ALNNFKKLIYKYPNSDFYKSSKNYIFHLNERIAFHELQIIK 189

Query: 563 IIFRKTAMDCDN 598
             F+K A    N
Sbjct: 190 FYFKKHAYSASN 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,214,487
Number of Sequences: 1657284
Number of extensions: 11621014
Number of successful extensions: 23257
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23248
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)