Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0284
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    28   1.5  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   5.9  

>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 80  HTSQRNASGKYL*CIFVTISFRPSSFNIEL-FIFSLVFFYDALIV*FRAYC 229
           HT+   A+G Y   +F+ +S   S  +I   F+ SLV  Y A I   R YC
Sbjct: 147 HTTNAMATGFY--SLFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRIYC 195


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 470  GYWEYDFLASSINNFYHRN 526
            G W+Y+ +A  +NNF++++
Sbjct: 1059 GRWDYNRVAEMVNNFFYKS 1077


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 411 NLFLNIKFWSFYPVFWLSIA 352
           N F   +F  FY +FWLS+A
Sbjct: 91  NYFAKSEFRGFYVLFWLSMA 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,072
Number of Sequences: 5004
Number of extensions: 54160
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)