Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0284
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0273 + 1822370-1822503,1822913-1823258,1823393-1823635,182...    31   0.87 
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    28   8.1  

>02_01_0273 +
           1822370-1822503,1822913-1823258,1823393-1823635,
           1824212-1824268,1824407-1824487,1824725-1824786,
           1824990-1826004
          Length = 645

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 452 RNNSRSGYWEYDFLASSINNFYHRNFLINVVESQWIVIIFRK 577
           R   +S  WEY  +  S N   H  + I+ +ES+W   +FR+
Sbjct: 526 RMELQSIMWEYVGIVRSTNRLKHAEWKISDLESEWEEFLFRR 567


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 513 KLFMLDARKSYSQ*PDLELFLSTQFKNIYHREFVNLFLNIKFWSFY 376
           K FM+ A  S +   + E+FL    +N++H  F+ L +  + W F+
Sbjct: 475 KTFMIAASSSSAAWSEFEVFL---LENLFHPHFLCLEILTELWCFF 517


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,988,617
Number of Sequences: 37544
Number of extensions: 256036
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)